| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,089,094:1 | +T | 6.0% | coding (102/510 nt) | PP_2697 ← | flavin reductase domain‑containing oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,089,094 | 1 | . | T | 6.0% | 266.2 / 9.1 | 67 | coding (102/510 nt) | PP_2697 | flavin reductase domain‑containing oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base . (29/34); new base T (2/2); total (31/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
GACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAGCGTGCGTTAGCGAGTTCC > NC_002947/3088947‑3089242 | gACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑Tc < 2:1153717/150‑1 (MQ=255) aCCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCa > 1:1744235/1‑150 (MQ=255) cTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACATTc < 2:1440930/150‑1 (MQ=255) tCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACGAGCGGAGGCCTCATAGATAATCTCTAGAAGGACTGGCAGGTGAAGACGAACGCC‑TCACCTTCg > 2:424528/1‑150 (MQ=255) cccTGACAGGATGTTGACCGTGAAGCGGCCAGCCGGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACATTCgtg < 2:1259757/149‑1 (MQ=255) aCCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCTGC‑TCACCTTCgtg < 2:1627934/150‑1 (MQ=255) gATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGt > 2:998412/1‑150 (MQ=255) gATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGt > 2:703972/1‑150 (MQ=255) gATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGt > 2:1023/1‑150 (MQ=255) aTGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTa < 2:242969/150‑1 (MQ=255) aTGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTa < 2:1744235/150‑1 (MQ=255) aCCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACTCCAGCGGCGGGCTCATCGATACGCTTTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACTTTCGTGGTGCGATGTAATCAcc < 2:365892/150‑1 (MQ=255) tGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGa > 2:1316386/1‑150 (MQ=255) gCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCg < 1:1158404/150‑1 (MQ=255) ggTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCt < 1:1316386/150‑1 (MQ=255) gTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTg < 1:1633978/150‑1 (MQ=255) gTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTg > 2:287449/1‑150 (MQ=255) gCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGaaaa < 1:703972/150‑1 (MQ=255) ccGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAg < 1:540219/150‑1 (MQ=255) gAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTc < 1:998412/150‑1 (MQ=255) gAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTc < 1:1239297/150‑1 (MQ=255) tGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGAt < 1:1559971/95‑1 (MQ=255) tGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGAt > 2:1559971/1‑95 (MQ=255) tGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATg < 2:513625/110‑1 (MQ=255) tGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAACCACCGTGATg > 1:513625/1‑110 (MQ=255) gACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCg > 1:214067/1‑103 (MQ=255) gACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCg < 2:214067/103‑1 (MQ=255) cATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGt > 1:531027/1‑116 (MQ=255) cATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGt < 2:531027/116‑1 (MQ=255) tCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGa > 1:1941229/1‑150 (MQ=255) acTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGGGGTATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGc > 1:1876310/1‑150 (MQ=255) acTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGc > 2:1338670/1‑150 (MQ=255) tGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGt > 1:80963/1‑108 (MQ=255) tGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGt < 2:80963/108‑1 (MQ=255) tGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCg > 1:1428872/1‑150 (MQ=255) aTGACACCAGCTGCGGGCTCATCGTTACGCTGTAGAGCGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCTTGGTGCGATTTAATCACCGTGATGCCGGATTCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTAc < 1:479120/150‑1 (MQ=255) acacCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACATTCgtg < 1:1223198/70‑1 (MQ=255) acacCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACATTCgtg > 2:1223198/1‑70 (MQ=255) acCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCATGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGaa > 1:685935/1‑150 (MQ=255) ccAGCGGCGGGCTCATCGATACGCTGTCGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGaaa < 1:1023/150‑1 (MQ=255) ccAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCATGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGaaa < 2:685935/150‑1 (MQ=255) gcggGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACa > 1:1489023/1‑150 (MQ=255) aTCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCAc > 1:589757/1‑68 (MQ=255) aTCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCAc < 2:589757/68‑1 (MQ=255) tCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTc < 1:595828/150‑1 (MQ=255) tCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTc < 2:1428872/150‑1 (MQ=255) gATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCt > 2:1103402/1‑150 (MQ=255) tGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTa < 2:689244/76‑1 (MQ=255) tGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTa > 1:689244/1‑76 (MQ=255) aCTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCAttt < 2:1489023/150‑1 (MQ=255) cTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTa < 1:1786130/109‑1 (MQ=255) cTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTa > 2:1786130/1‑109 (MQ=255) tGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGAGTCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCa > 1:630077/1‑150 (MQ=255) gaaGGTG‑AGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTa < 2:1311145/122‑1 (MQ=255) gaaGGTG‑AGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTa > 1:1311145/3‑124 (MQ=255) gCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGAc < 1:602892/91‑1 (MQ=255) gCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGAc > 2:602892/1‑91 (MQ=255) ggTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACAGGGTATTTCCGGTGGCTGCTTTCATTTCAgcgtc > 2:101318/1‑149 (MQ=255) gaGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcat > 1:848286/2‑134 (MQ=255) gaGCCGATCGGCTTCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcat < 2:848286/133‑1 (MQ=255) gCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGa > 1:1343437/1‑81 (MQ=255) gCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGa < 2:1343437/81‑1 (MQ=255) gATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcattca > 1:74434/1‑131 (MQ=255) gATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGcattca < 2:74434/131‑1 (MQ=255) aTCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGa > 2:1479506/1‑77 (MQ=255) aTCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGa < 1:1479506/77‑1 (MQ=255) gC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAGCGTGCGTTAGCGAGTTcc < 1:424528/150‑1 (MQ=255) | GACCTGCTCACCTGACAGGATGTTGACCGTGAAGCGGCCAGCCTGGCGGATTTTCGGGTAGCTGGCCGAACTGGACATCACACTGAATGACACCAGCGGCGGGCTCATCGATACGCTGTAGAACGACTGGCAGGTGAAGCCGATCGGC‑TCACCTTCGTGGTGCGATGTAATCACCGTGATGCCGGATGCGTAGTGCCCGAGTGCCTGGCGAAAAGTCGACGGCTCGATCGCCGTACTGGAAAGCAACATGGTAGGTCCTGTGGCTGCATTCATTTCAGCGTGCGTTAGCGAGTTCC > NC_002947/3088947‑3089242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |