| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 85001 = | 94 (1.290) | 5 (0.070) | 5/238 | NT | 5.1% | coding (804/825 nt) | aroE | shikimate 5‑dehydrogenase |
| ? | NC_002947 | 85032 = | 97 (1.390) | intergenic (+10/+120) | aroE/PP_0075 | shikimate 5‑dehydrogenase/choline sulfate transporter | |||||
TGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/85154‑85001‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCAC > NC_002947/85032‑85176 TGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTG > 1:1381680/1‑150 GGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCG > 2:528694/1‑150 GTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGG > 1:438702/1‑150 CCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGC < 1:1053153/120‑1 CCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGC > 2:1053153/1‑120 CCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGC < 1:300303/114‑1 CCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGC > 2:300303/1‑114 CGGCCAGCTCAGCCCCGAGCGAGTTGCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACC > 2:400094/1‑150 GCCGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCAC > 2:1805263/1‑150 CGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGAT < 1:57062/93‑1 CGGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGAT > 2:57062/1‑93 GGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTT > 1:374593/1‑82 GGGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTT < 2:374593/82‑1 TGAGGTTGGGATTCTGGGTCTGCTTTGCAGCCCATCGCGACGCAAGGCCGCTCCCACAGAGGATCGGCGTACGACGTACTTTGTGGGAACGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGGCCAGCTCAGCCCCGAGCGAGTTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/85154‑85001‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggGGCCGCTTGGCGGCCCTATCGCGACGCAAGGCCGTTCCCACAAAGTACGTCGTACGCCGATCCTCTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCAAAGCAGACCCAGAATCCCAACCTCATTCCTCAAACCGGATCGGGCAC > NC_002947/85032‑85176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |