New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 312731	89 (1.220)	8 (0.120)	4/220	NT	9.0%	coding (483/831 nt)	fdhD	protein sulfur transferase
	?	NC_002947	= 312759	83 (1.280)					coding (455/831 nt)	fdhD	protein sulfur transferase

GGCCAGGCCACCCTGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/312569‑312731 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccagtggctggTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTGATCGGC  <  NC_002947/312759‑312611                                                                                                                                                                                                                                                                                                                          GGCCAGGCCACCCTGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTG                                                                                                                                                                    >  2:654676/1‑150  GCCAGGCCACCCTGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGG                                                                                                                                                                   <  2:833598/150‑1   CCAGGCCACCCTGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAAGAACACAACATGCACGGCACCGCAATGCTGGC                                                                                                                                                                  >  1:492106/1‑150       GCCACCCTGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAG                                                                                                                                                              >  2:1103272/1‑150        CCACCCTGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGT                                                                                                                                                             >  1:93267/1‑150             CTGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTG                                                                                                                                                        >  2:1525991/1‑150              TGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTGG                                                                                                                                                       >  2:4200/1‑150                                      AGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGC                                                                                                                                                                  <  1:834519/115‑1                                      AGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGC                                                                                                                                                                  >  2:834519/1‑115                                             CGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCGAGCAGCAGTGCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCCGGCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCA                                                                                                                        <  1:224534/150‑1                                                    TTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAG                                                                                                                                                              <  2:791774/105‑1                                                    TTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAG                                                                                                                                                              >  1:791774/1‑105                                                            GGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGC                                                                                                                                                                  <  1:432959/93‑1                                                            GGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGC                                                                                                                                                                  >  2:432959/1‑93                                                               actgGTGCAGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACT                                                                                                                  <  1:351901/134‑1                                                               actgGTGCAGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACT                                                                                                                  >  2:351901/5‑138                                                                GTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCT                                                                                                                                                         <  1:1842803/98‑1                                                                GTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCT                                                                                                                                                         >  2:1842803/1‑98                                                                 TTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCC                                                                                                                         >  1:280835/1‑129                                                                 TTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCC                                                                                                                         <  2:280835/129‑1                                                                      CCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCC                                                                                               <  1:475204/150‑1                                                                      CCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCT                                                                                                                                                         <  2:1928935/92‑1                                                                      CCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCT                                                                                                                                                         >  1:1928935/1‑92                                                                                             GCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCCGGCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTC                                                                                                                          <  1:1014185/100‑1                                                                                             GCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCCGGCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTC                                                                                                                          >  2:1014185/1‑100                                                                                                                                                       GCCCAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGAC              <  1:1038780/150‑1                                                                                                                                                          CAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAA           <  2:1091038/150‑1                                                                                                                                                          CAGTGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCAATTACCCACCTGTGCTTTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAA           <  2:1506875/150‑1                                                                                                                                                             TGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCGGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTG        >  1:43025/1‑150                                                                                                                                                             TGGCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCACGCACTGGGCAAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGGCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGACATCGACAAACTG        >  2:1761836/1‑150                                                                                                                                                               GCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGTATTGTTCATGGACCGCCAAG                                                                <  1:712952/92‑1                                                                                                                                                               GCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGTATTGTTCATGGACCGCCAAG                                                                >  2:712952/1‑92                                                                                                                                                               GCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTGAT      >  1:1103272/1‑150                                                                                                                                                               GCTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTGAT      >  2:948048/1‑150                                                                                                                                                                CTGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTGATC     <  2:879176/150‑1                                                                                                                                                                 TGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTGATCG    <  2:1456459/150‑1                                                                                                                                                                 TGGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTGATCG    >  1:1316109/1‑150                                                                                                                                                                  GGTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCATCGACAAACTGATCGG   <  1:445195/150‑1                                                                                                                                                                   GTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTGATCGGC  >  2:379118/1‑150                                                                                                                                                                                                                                                                                                                          GGCCAGGCCACCCTGGGTGTCGATGCGTTGTCGCAGCAGGGCGCCGATCAGTTTGTCGAGGGCGTTGTGCCGGCCGATGTCTTCGCGGCCAAGCAGCAGTTCGCCTTGGCGGTCCATGAACAATGCTGCATGCACGGCACCGCAATGCTGGCCCAGTGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/312569‑312731 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccagtggctggTCGGCCTGCGCGAGCGCATCGACGCCTTCCAGCCACTGGGCCAGCATTGCGGTGCCGTGCATGCAGCATTGTTCATGGACCGCCAAGGCGAACTGCTGCTTGGCCGCGAAGACATCGGCCGGCACAACGCCCTCGACAAACTGATCGGC  <  NC_002947/312759‑312611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.