New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	450910 =	71 (0.970)	4 (0.060)	5/226	NT	6.1%	noncoding (104/127 nt)	PP_mr05	RsmY ncRNA
	?	NC_002947	450936 =	58 (0.870)					intergenic (+3/+16)	PP_mr05/PP_0371	RsmY ncRNA/LysR family transcriptional regulator

CCTGGTATTTCGCGATGCCCAGCGCCAGCAGGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCCGAAGCGGGGTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/451069‑450910 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggggttttcTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCATCAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAGGCCTGCTGGCGCTGGGCATCGCGAAATACCAGGCCGACCTTCAACGGC  >  NC_002947/450936‑451084                                                                                                                                                                                                                                                                                                                       CCTGGTATTTCGCGATGCCCAGCGCCAGCAGGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCCGAAG                                                                                                                                                                 >  1:56280/1‑150  CTGGTATTTCGCGATGCCCAGCGCCAGCAGGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCCGAAGC                                                                                                                                                                >  1:163984/1‑150   TGGTATTTCGCGATGCCCAGCGCCAGCAGGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCCGAAGCG                                                                                                                                                               >  2:1670976/1‑150         TTCGCGATGCCCAGCGCCAGCAGGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCCGAAGCGGGGTTT                                                                                                                                                         <  1:196586/150‑1                           AGCAGGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCCGAAGCGGGGTTTTC                                                                                                                                                       >  1:1546322/1‑134                           AGCAGGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCCGAAGCGGGGTTTTC                                                                                                                                                       <  2:1546322/134‑1                               GGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCTTCGGCGGGGTTTTCTTTGCGTGCGTGTTTTTCAG                                                                                                                                   <  1:1638828/150‑1                                                                                             CATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCTTCGGCGGGGTTTTCT                                                                                                                                                      <  1:1006755/69‑1                                                                                             CATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCTTCGGCGGGGTTTTCT                                                                                                                                                      >  2:1006755/1‑69                                                                                                                                          AACCCCGCCGAAGCGGGGTTTTCTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCATCAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAGGCCTGCTGGCGCTGGGCATCGCGAAA                        >  1:1184370/1‑150                                                                                                                                          AACCCCGCCGAAGCGGGGTTTTCTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCATCAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAG                                                  <  1:1453173/124‑1                                                                                                                                          AACCCCGCCGAAGCGGGGTTTTCTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCATCAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAG                                                  >  2:1453173/1‑124                                                                                                                                                      GCGGGGTTTTCTTTGCGTGCGTGTTTTTCAGGCCAGCACATACAGCGGTGATGCTCCCATGAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAGGCCTGCTGGCGCTGGGCATCGCGAAATACCAGGCCGAC            >  2:219540/1‑150                                                                                                                                                           GTTTTCTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCAT                                                                                                      >  1:1096891/1‑55                                                                                                                                                           GTTTTCTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCAT                                                                                                      <  2:1096891/55‑1                                                                                                                                                              TTCTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCATCAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAGGCCTGCTGGCGCTGGGCATCGCGAAATACCAGGCCGACCTTCAACG    <  1:1756851/150‑1                                                                                                                                                                CTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCATCAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAGGCCTGTTGGCGCTGGGCATCGCGAAATACCAGGCCGACCTTCAACGGC  >  1:1873358/1‑150                                                                                                                                                                CTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCATCAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAGGCCTGCTGGCGCTGGGCATCGCGAAATACCAGGCCGACCTTCAACGGC  >  2:273392/1‑150                                                                                                                                                                                                                                                                                                                       CCTGGTATTTCGCGATGCCCAGCGCCAGCAGGCCTCTGTGGAGCTGCTGCGCACGTTGCTGGAGGAAGAGACGGACGCTCGCCTGATGGGAGCATCACCGCTGGATGTGCTGGCCTGAAAAACACGCACGCAAAGAAAACCCCGCCGAAGCGGGGTTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/451069‑450910 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggggttttcTTTGCGTGCGTGTTTTTCAGGCCAGCACATCCAGCGGTGATGCTCCCATCAGGCGAGCGTCCGTCTCTTCCTCCAGCAACGTGCGCAGCAGCTCCACAGAGGCCTGCTGGCGCTGGGCATCGCGAAATACCAGGCCGACCTTCAACGGC  >  NC_002947/450936‑451084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.