New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 614300	66 (0.900)	9 (0.160)	9/186	NT	13.7%	intergenic (‑116/+62)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase
	?	NC_002947	= 614316	64 (1.170)					intergenic (‑132/+46)	dxs/ispA	1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase

AGCGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/614122‑614300 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtaggatcgggtttacccgcgaatgcgATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACG  <  NC_002947/614316‑614173                                                                                                                                                                                                                                                                                                                                      AGCGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCC                                                                                                                                                                                >  2:720658/1‑150   CGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCT                                                                                                                                                                              <  1:479334/150‑1      GGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTA                                                                                                                                                                           <  2:1209065/150‑1      GGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTA                                                                                                                                                                           <  1:1613267/150‑1        TCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGGGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGG                                                                                                                                                                         <  1:994235/150‑1          GAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGAT                                                                                                                                                                       <  2:963916/150‑1             CAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGG                                                                                                                                                                    <  2:371165/150‑1              AACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGG                                                                                                                                                                   <  1:1534181/150‑1              AACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGG                                                                                                                                                                   <  2:533345/150‑1              AACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGG                                                                                                                                                                   <  2:1811171/150‑1              AACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCG                                                                                                                                                                     <  2:695457/148‑1              AACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCG                                                                                                                                                                     >  1:695457/1‑148                  GCGTGACCGGGCGTTCGCGGGGGACCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTA                                                                                                                                                               >  1:1425486/1‑150                    GTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACC                                                                                                                                                             >  2:1722503/1‑150                     TGACCGGGCGGTAGCGAGGGATCTCTCGAAACGTCATGGGCAGCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCC                                                                                                                                                            <  2:1556326/150‑1                              GTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG                                                                                                                                                   >  1:1774580/1‑150                              GTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG                                                                                                                                                   >  2:1821361/1‑150                               TTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCtt                                                                                                                                                  <  1:560614/150‑3                                          TCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGG                                                                                                                                                                   <  1:1240755/122‑1                                          TCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGG                                                                                                                                                                   >  2:1240755/1‑122                                                                           TTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAAT                                                                                                                                                      <  1:1604092/102‑1                                                                           TTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAAT                                                                                                                                                      >  2:1604092/1‑102                                                                                  TGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGG                                                                                                                       <  2:433478/125‑1                                                                                  TGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGG                                                                                                                       >  1:433478/1‑125                                                                                   GTGTGAAGACGCGGAAGTTTACCCCATTGGGGGAAAAGTGCCCACTAACCCTCAGGTTACGTGGCCCCCTGTAGCATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGC                                                                                             <  1:611423/150‑1                                                                                                   GTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGC                                                                                                                         >  1:1143478/1‑106                                                                                                   GTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGC                                                                                                                         <  2:1143478/106‑1                                                                                                                  GGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGC                                                                                                                                                          <  1:1626327/59‑1                                                                                                                  GGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGC                                                                                                                                                          >  2:1626327/1‑59                                                                                                                            CCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGG                                                                                                  <  2:1439073/104‑1                                                                                                                            CCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGG                                                                                                  >  1:1439073/1‑104                                                                                                                                          GTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAAC                                                                                                                 >  2:704825/1‑75                                                                                                                                          GTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAAC                                                                                                                 <  1:704825/75‑1                                                                                                                                                    CCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑TCGGCAAATTCAAGATCGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTA                            >  2:1582604/1‑150                                                                                                                                                       CTGTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAA                         <  2:262401/150‑1                                                                                                                                                         GTAGGATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACCGGGGGGCGCGTAACCTGTGGTCGAATAGGCGCTTTTCCCACAATGGGGTAAACTGCCGCGGCTTCACACATCTATAACc                       >  2:1425486/1‑149                                                                                                                                                             GATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGGCTC                   >  2:1414896/1‑150                                                                                                                                                             GATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTC                   <  1:683360/150‑1                                                                                                                                                             GATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTC                   >  1:1821361/1‑150                                                                                                                                                             GATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTC                   <  1:1403798/150‑1                                                                                                                                                             GATCGGGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTC                   >  2:1403682/1‑150                                                                                                                                                                  GGTTTACCCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTG              >  2:1920319/1‑150                                                                                                                                                                         CCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCA       >  1:678441/1‑150                                                                                                                                                                         CCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCA       <  1:586622/150‑1                                                                                                                                                                         CCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACC                              <  2:156526/127‑1                                                                                                                                                                         CCGCGAATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACC                              >  1:156526/1‑127                                                                                                                                                                              AATGCGATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACG  >  2:37228/1‑150                                                                                                                                                                                                                                                                                                                                      AGCGCGGTCGAGCAACGGCGTGACCGGGCGTTCGCGGGGGATCTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/614122‑614300 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtaggatcgggtttacccgcgaatgcgATCTTGAATTTGCCGA‑CGCATTCGCGGGTAAACCCGATCCTACAGGGGGCCGCGTAACCTGTGGTCGAATGGGCACTTTTCCCACAATGGGGTAAACTGCCGCGTCTTCACACACCTATAACGACTCGCCTGATGCCCACGACG  <  NC_002947/614316‑614173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.