| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 741435 = | 101 (1.380) | 6 (0.090) | 6/236 | NT | 5.9% | intergenic (+32/‑468) | PP_t12/PP_0635 | tRNA‑Thr/group II intron‑encoding maturase |
| ? | NC_002947 | 741486 = | NA (NA) | intergenic (+83/‑417) | PP_t12/PP_0635 | tRNA‑Thr/group II intron‑encoding maturase | |||||
GCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/741587‑741435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCC > NC_002947/741486‑741631 GCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCC < 1:1257159/150‑1 TAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCTGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAG > 1:834180/1‑150 ACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGG < 2:1434443/147‑1 ACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGG > 1:1434443/1‑147 CTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGG > 1:773652/1‑140 CTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGG < 2:773652/140‑1 GCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGC > 1:519586/1‑150 GCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGA > 2:915782/1‑150 TGCCTGGCGGACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGGTATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGG < 2:1183401/116‑1 TGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGGTATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGG > 1:1183401/1‑116 CTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGGCATGGCGCGTTGCGC > 1:228761/1‑65 CTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGGCATGGCGCGTTGCGC < 2:228761/65‑1 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTTGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAG > 1:4164/1‑150 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAG < 2:80797/150‑1 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAG > 1:349415/1‑150 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGG < 1:648834/128‑1 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGG > 2:648834/1‑128 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAG > 1:1435868/1‑95 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAG < 2:1435868/95‑1 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTAC < 1:586831/83‑1 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTAC > 2:586831/1‑83 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTC > 2:854157/1‑80 GCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTC < 1:854157/80‑1 CCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTAGTGGGGGCCAAGTGGGTGACTTGGATGTGAATGTACTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCGAGGGGGTCGCCGGTGACTGCGAATCTGAAGGAcga > 2:158011/1‑147 CAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCC > 1:1115099/1‑150 CAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAA < 2:1023647/143‑1 CAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAA > 1:1023647/1‑143 CAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGG > 1:890290/1‑94 CAGGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGCGAAAGTCCTCTACACACCCGGCAAGG < 2:890290/94‑1 GGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGT < 2:1086225/98‑1 GGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGT > 1:1086225/1‑98 GGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGG < 2:1942418/53‑1 GGCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGG > 1:1942418/1‑53 GCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGG < 2:310527/114‑1 GCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGG > 1:310527/1‑114 GCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCCGCACAAGGCGGGCTTCTATTGGTGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/741587‑741435‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaggCATGGCGCGTTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCC > NC_002947/741486‑741631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |