| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 741972 | NA (NA) | 3 (0.040) | 3/240 | NT | NA | coding (70/1422 nt) | PP_0635 | group II intron‑encoding maturase |
| ? | NC_002947 | = 741999 | NA (NA) | coding (97/1422 nt) | PP_0635 | group II intron‑encoding maturase | |||||
AAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/741820‑741972‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcaCCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < NC_002947/741999‑741851 aacGGCGAGAGGATGAGGGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 2:629801/147‑1AAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 2:308817/150‑1AAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 1:1636463/150‑1AAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG > 2:1748123/1‑150AAAGGCGACGGGACGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 2:596730/150‑1AAAGGCGACGGGACGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 1:1643552/150‑1 AAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT < 1:1317717/150‑1 AAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT < 2:556489/150‑1 AAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT > 1:380468/1‑150 ttgctACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC < 1:1457223/145‑1 AGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC < 2:132186/150‑1 AGGCGACGGGACGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAAGCCCGCCCCGGTTATGCCGCCACTAGGCGTTGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC < 1:725045/150‑1 GGCGACGGGACGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAACCTGTCA < 2:966043/150‑1 TCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT < 2:1184703/124‑1 TCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT > 1:1184703/1‑124 AGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACA < 2:1664826/150‑1 TAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 1:1832333/110‑1 TAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG > 2:1832333/1‑110 gtggcGCGGTTAAC‑‑CGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT > 2:1613461/6‑105 gtggcGCGGTTAAC‑‑CGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGT < 1:1613461/100‑1 TGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC > 2:1425029/1‑105 TGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTC < 1:1425029/105‑1 GGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 1:45653/99‑1 GGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG > 2:45653/1‑99 GCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCGGTGGGAAATTTCTGC > 1:402055/1‑150 CCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG > 2:929509/1‑64 CCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTG < 1:929509/64‑1 GCAGAAATTTCCCACAGCGGAAACTGTCATCCCGAGCTCCGGCCAGAAGCCGAGGGTGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC > 2:402055/1‑150 CACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCG < 1:1271734/150‑1 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTTCGGTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < 2:1554126/150‑1 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACTGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCA > 2:1263215/1‑134 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACTGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCA < 1:1263215/134‑1 ACCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG > 1:1024094/1‑150 AAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGTTAACCGCGCCACCAAGGGCCGAACAGGTTATGCCGCCAGTAGGCGTCGCCGTCTCGTTGGTAACCGTAATGCAGAAATTTCCCACAGCGGAAACTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/741820‑741972‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcaCCCTCGGCTTCTGGCCGGAGCTCGGGATGACAGTTTCCGCTGTGGGAAATTTCTGCATTACGGTTACCAACGAGACGGCGACGCCTACTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGCGGTTAACCGCCACTTACTACGGCTTCGG < NC_002947/741999‑741851 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |