New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	851021 =	93 (1.270)	6 (0.080)	4/244	NT	6.5%	intergenic (‑601/‑204)	pcs/hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
	?	NC_002947	4022789 =	81 (1.130)					intergenic (‑440/+228)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease

TTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/851096‑851021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGC  >  NC_002947/4022789‑4022911                                                                                                                                                                                                         TTCAGGTCTTGCGGGCTTTTGATCTGGCTTTTGATCCTGATTTCGATCTTCGCGACTGCAGGAGGCCGAACGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCTCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCAC                                                   <  1:901544/150‑1            CCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCAC                                                   >  1:1640971/1‑139            CCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCAC                                                   <  2:1640971/139‑1                  TTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCT                                  >  1:1043781/1‑150                         TGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGt                              <  1:113500/147‑2                         TGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCACAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTGCGCAAGGCCTGCGt                              >  2:113500/1‑146                                                                           GGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGC  >  1:1353093/1‑125                                                                           GGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGC  <  2:1353093/125‑1                                                                            GGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCC                     <  1:1825972/105‑1                                                                            GGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCC                     >  2:1825972/1‑105                                                                                                                                                                                                         TTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/851096‑851021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGC  >  NC_002947/4022789‑4022911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.