New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 88386517 (0.230)17 (0.310) 12/184 NT 52.7% intergenic (+100/‑228) PP_0766/PP_0767 hypothetical protein/LuxR family transcriptional regulator
?NC_002947 = 883875 18 (0.330)intergenic (+110/‑218) PP_0766/PP_0767 hypothetical protein/LuxR family transcriptional regulator

CTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/883693‑883865
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcctcttcgcgggtgaacccgctcctacCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTGG  <  NC_002947/883875‑883729
                                                                                                                                                                                                                                                                                                                                
CTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTC                                                                                                                                                                            >  2:1571461/1‑150
       TTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG                                                                                                                                                                     >  2:1616405/1‑150
       TTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGG                                                                                                                                                                     <  1:224875/150‑1
             TTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGTGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC                                                                                                                                                               >  2:1577802/1‑150
             TTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC                                                                                                                                                               >  1:1396816/1‑150
             TTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAC                                                                                                                                                               >  2:43153/1‑150
                 GTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCTTCAGTCGGTTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGC                                                                                                                                                           <  1:1884352/150‑1
                 GTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGC                                                                                                                                                           <  2:1396816/150‑1
                 GTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGC                                                                                                                                                           <  1:43153/150‑1
                  TGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCC                                                                                                                                                             <  1:440995/147‑1
                  TGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCC                                                                                                                                                             >  2:440995/1‑147
                      AGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTAGTCGCTAAGCTGAAATCACTGAACGCCGGGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                      >  2:1086661/1‑150
                       GCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC                                                                                                                                                     >  2:1902854/1‑150
                           GGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCG                                                                                                                                                 >  1:272828/1‑150
                           GGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCG                                                                                                                                                 >  2:1758711/1‑150
                                   TCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGT                                                                                                                                         <  1:713770/150‑1
                                     CAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAG                                                                                                                                       >  1:418457/1‑150
                                     CAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAG                                                                                                                                       <  1:1758711/150‑1
                                      AGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGC                                                                                                                                                  >  2:11822/1‑138
                                      AGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGC                                                                                                                                                  <  1:11822/138‑1
                                          CGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCG                                                                                                                                  <  2:1600554/150‑1
                                           GCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                 <  1:1035245/150‑1
                                            aagcgtaGCGTCCGTTGGATATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGG                                                                                                                                <  2:418457/143‑1
                                            CAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGG                                                                                                                                <  2:272828/150‑1
                                            CAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGG                                                                                                                                <  1:1336079/150‑1
                                            CAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGG                                                                                                                                <  2:822338/150‑1
                                                                               ATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGT                                                                                                                               >  2:502124/1‑116
                                                                               ATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGT                                                                                                                               <  1:502124/116‑1
                                                                                                  TCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                 >  1:11299/1‑95
                                                                                                  TCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                 <  2:11299/95‑1
                                                                                                    CCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                 >  1:736237/1‑93
                                                                                                    CCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGCGG                                                                                                                                 <  2:736237/93‑1
                                                                                                                              GTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGC                                                                                                                                   <  1:885786/65‑1
                                                                                                                              GTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACCGCGGAACCTGTAGGAGC                                                                                                                                   >  2:885786/1‑65
                                                                                                                                                GGCCTCTTCGCGGGTGAACCCACTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCtcgc                                                                                >  1:971786/1‑94
                                                                                                                                                GGCCTCTTCGCGGGTGAACCCACTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCtcgc                                                                                <  2:971786/98‑5
                                                                                                                                                                 ACCCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGGCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCT           >  2:330977/1‑150
                                                                                                                                                                   CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGC         >  2:1786037/1‑150
                                                                                                                                                                   CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTT                                                    >  2:388875/1‑107
                                                                                                                                                                   CCGCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTT                                                    <  1:388875/107‑1
                                                                                                                                                                     GCTCCTACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACACCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGG       >  1:1577802/1‑150
                                                                                                                                                                         CTACCGCGGAACCTGTAGGACCGGGTTCGCCCGCGAGGAGGCAGGGTCAGGAAAAAGAAACGCCTCTGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTG   <  2:1390605/150‑1
                                                                                                                                                                          TACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTGG  >  2:1467463/1‑150
                                                                                                                                                                          TACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAA                               >  2:1262730/1‑121
                                                                                                                                                                          TACCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAA                               <  1:1262730/121‑1
                                                                                                                                                                                                                                                                                                                                
CTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAGAACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/883693‑883865
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcctcttcgcgggtgaacccgctcctacCGCGGAACCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGTCAGGAAATAGAAACGCCCCGGCGAGCCGGGGCGTTCTGGGGATCACACGGCGTTCAGTGATTTCAGCTTAGCGAATACCCGACTGACGCAGCGCTGCGGGCTGG  <  NC_002947/883875‑883729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.