| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 917692 = | 71 (0.970) | 6 (0.090) | 6/226 | NT | 8.9% | intergenic (‑123/+76) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| ? | NC_002947 | 917754 = | 58 (0.870) | intergenic (‑185/+14) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D | |||||
CCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917849‑917692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcctacaCTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCACC > NC_002947/917754‑917902 CCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGTAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCG > 2:29233/1‑150CCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCG > 1:1758128/1‑150CCAGGGTTACTCTTTCATTGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCG < 2:1019395/150‑1 CAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGTAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC < 1:29233/150‑1 GGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC < 2:1111326/150‑1 TTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTA < 2:775612/150‑1 TATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTAC < 2:724618/150‑1 GTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACGGG > 1:580026/1‑150 CGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC > 1:768210/1‑117 CGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC < 2:768210/117‑1 TGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCG > 2:987581/1‑150 CAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGG < 2:573549/97‑1 CAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGG > 1:573549/1‑97 CCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAA‑‑CGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGG > 1:1867191/1‑150 GCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATC < 2:573499/81‑1 GCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAA‑‑CCGCTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATC > 1:573499/1‑81 GCTCCTACACTGGCAGCAAAAGATCAGCACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTG > 2:1854197/1‑150 CTCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGA > 1:1107879/1‑150 TCCTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGT < 2:1867642/113‑1 TCCTACACTGGCAGCAAAAGATCAGAACACGCTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGT > 1:1867642/1‑113 ccACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAG < 2:541903/137‑1 CTACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAG > 1:541903/1‑139 TACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTC < 1:1111326/150‑1 TACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG > 2:1148820/1‑147 TACACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG < 1:1148820/147‑1 ACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCACC < 2:1107879/150‑1 ACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG < 2:343822/144‑1 ACTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAG > 1:343822/1‑144 CCAGGGTTATGCGTCGATCGACAGCAACAGCGACAACGATGAACTGCGGGTAATCGTCGATTACCCACTGAACGTGTTCTGATCTTTTGCTGCCAGTGTAGGAGCGGTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/917849‑917692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgctcctacaCTGGCAGCAAAAGATCAGAACACGTTCAGTGGGTAATCGACGATTACCCGCAGTTCATCGTTGTCGCTGTTGCTGTCGATCGACGCATAACCCTGGCTGCCGCGGTGGGTGGCATAGCGTACCAGCACCGACAGGTCCTTGAGGTCACC > NC_002947/917754‑917902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |