New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1001519 = | 68 (0.930) | 8 (0.110) | 6/240 | NT | 10.4% | coding (493/771 nt) | PP_0863 | hypothetical protein |
? | NC_002947 | 1001546 = | 72 (1.020) | coding (520/771 nt) | PP_0863 | hypothetical protein |
TTCCCCGCAACCCGGGCCTGCTCCAGCCACTGCCCTGCCTCGGCCAACTGCCCACGCTCGACCAGCACCAGCGCCAGGCTGAACATCCCACGAAAATCCCCCGCCTCGGCCGAACGCCGATACCAGCGCACCGCCCGCGC‑CGGGCTGG‑‑‑‑‑GCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1001670‑1001519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcTGGTATCGGCGTTCGGCCGAGGCGGGGGATTTTCGTGGGATGTTCAGCCTGGCGCTGGTGCTGGTCGAGCGTGGGCAGTTGGCCGAGGCAGGGCAGTGGCTGGAGCAGGCCCGGGTTGCGGGGAACATGAATTTCCTGCGTGCTGCGTT > NC_002947/1001546‑1001694 TTCCCCGCAACCCGGGCCTGCTCCAGCCACTGCCCTGCCTCGGCCAACTGCCCACGCTCGACCAGCACCAGCGCCAGGCTGAACATCCCACGAAAATCCCCCGCCTCGGCCGAACGCCGATACCAGCGCACCGCCCGCGC‑CGGGCTGG‑‑‑‑‑GC < 2:772192/150‑1 CCCCGCAACCCGGGCCTGCTCCAGCCACTGCCCTGCCTCGGCCAACTGCCCACGCTCGACCAGCACCAGCGCCAGGCTGAACATCCCACGAAAATCCCCCGCCTCGGCCGAACGCCGATACCAGCGCACCGCCCGCGC‑CGGGCTGG‑‑‑‑‑GCGC < 2:591340/150‑1 AGCCACTGCCCTGCCTCGGCCAACTGCCCACGCTCGACCAGCACCAGCGCCAGGCTGAACATCCCACGAAAATCCCCCGCCTCGGCCGAACGCCGATACCAGCGCCCAGCCCGGCG‑CGGGCGGT‑‑‑‑‑GCGCTGGTATCGGCGTTCGGCC > 1:1427865/1‑146 AGCCACTGCCCTGCCTCGGCCAACTGCCCACGCTCGACCAGCACCAGCGCCAGGCTGAACATCCCACGAAAATCCCCCGCCTCGGCCGAACGCCGATACCAGCGCCCAGCCCG‑GCGCGGGCGGT‑‑‑‑‑GCGCTGGTATCGGCGTTCGGCC < 2:1427865/146‑1 CACGCTCGACCAGCACCAGCGCCAGGCTGAACATCCCACGAAAATCCCCCGCCTCGGCCGAACGCCGATACCAGCGCCCAGCCCG‑GCGCGGGCGGT‑‑‑‑‑GCGCTGGTATCGGCGTTCGGCCGAGGCGG > 1:1825237/1‑125 CACGCTCGACCAGCACCAGCGCCAGGCTGAACATCCCACGAAAATCCCCCGCCTCGGCCGAACGCCGATACCAGCGCCCAGCCCG‑GCGCGGGCGGT‑‑‑‑‑GCGCTGGTATCGGCGTTCGGCCGAGGCGG < 2:1825237/125‑1 CAGCGCACCGCCCGCGC‑CGGGCTGG‑‑‑‑‑GCGCTGGTATCGGCGTTCGGCCGAGGCGGGGGATTTTCGTGGGATGTTCAGCCTGGCGCTGG < 1:1455209/87‑1 CAGCGCACCGCCCGCGC‑CGGGCTGG‑‑‑‑‑GCGCTGGTATCGGCGTTCGGCCGAGGCGGGGGATTTTCGTGGGATGTTCAGCCTGGCGCTGG > 2:1455209/1‑87 AGCGCACCGCCCGCGC‑CGGGCTGGGCGGTGCGCTGGTATCGGCGTTCGGCCGAGGCGGGGGATTTTCGTGGGATGTTCAGCCTGGCGCTGGTGCTGGTCGAGCGTGGGCAGTTGGCCGAGGCAG < 1:1118142/124‑1 AGCGCACCGCCCGCGC‑CGGGCTGGGCGGTGCGCTGGTATCGGCGTTCGGCCGAGGCGGGGGATTTTCGTGGGATGTTCAGCCTGGCGCTGGTGCTGGTCGAGCGTGGGCAGTTGGCCGAGGCAG > 2:1118142/1‑124 GCTGGTATCGGCGTTCGGCCGAGGCGGGGGATTTTCGTGGGATGTTCAGCCTGGCGCTGGTGCTGGTCGAGCGTGGGCAGTTGGCCGAGGCAGGGCAGTGGCTGGAGCAGGCCCGGGTTGCGGGGAACATGAATTTCCTGCGTGCTGCGT > 2:562952/1‑150 CTGGTATCGGCGTTCGGCCGAGGCGGGGGATTTTCGTGGGATGTTCAGCCTGGCGCTGGTGCTGGTCGAGCGTGGGCAGTTGGCCGAGGCAGGGCAGTGGCTGGAGCAGGCCCGGGTTGCGGGGAACATGAATTTCCTGCGTGCTGCGTT > 1:1942177/1‑150 TTCCCCGCAACCCGGGCCTGCTCCAGCCACTGCCCTGCCTCGGCCAACTGCCCACGCTCGACCAGCACCAGCGCCAGGCTGAACATCCCACGAAAATCCCCCGCCTCGGCCGAACGCCGATACCAGCGCACCGCCCGCGC‑CGGGCTGG‑‑‑‑‑GCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1001670‑1001519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcTGGTATCGGCGTTCGGCCGAGGCGGGGGATTTTCGTGGGATGTTCAGCCTGGCGCTGGTGCTGGTCGAGCGTGGGCAGTTGGCCGAGGCAGGGCAGTGGCTGGAGCAGGCCCGGGTTGCGGGGAACATGAATTTCCTGCGTGCTGCGTT > NC_002947/1001546‑1001694 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |