| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1149996 = | 59 (0.810) | 5 (0.080) | 3/226 | NT | 7.9% | intergenic (‑237/+20) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
| ? | NC_002947 | = 2071272 | 63 (0.950) | intergenic (+181/+46) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor | |||||
ACCCGCTGTCGTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1150155‑1149996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCAC < NC_002947/2071272‑2071124 ACCCGCTGTCGTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGT < 1:1133173/150‑1 CCGCTGTCGTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGT < 1:5164/150‑1 GCTGTCGTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGG < 2:1282373/150‑1 TGTCGTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGA < 2:644842/150‑1 CGTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCG < 2:1411218/150‑1 GTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGG > 1:1643100/1‑150 GTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGG > 1:877219/1‑150 TGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGC < 1:1896138/147‑1 TGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGC > 2:1896138/1‑147 ACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGT < 2:702393/77‑1 ACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGT > 1:702393/1‑77 CGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGGCGCGATCCCTGGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTc < 1:113817/150‑2 AACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGT < 1:1370857/57‑1 AACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGT > 2:1370857/1‑57 TGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTcc < 1:1606367/125‑3 TGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTcc > 2:1606367/1‑123 TGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCC < 2:801580/145‑1 TGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCC > 1:801580/1‑145 TGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACAC > 2:1187324/1‑143 TGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACAC < 1:1187324/143‑1 GAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCT < 1:847480/150‑1 GGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCCCCACGGTTTTGGCTTCGCGCGCAAGCCCGAATCAGACATGATGGGCTGCACAGGAGCCCCAATGGCTCTGAAAATCGAATAGGAGGCGGATTCACACCCGCCGTCCTCTCAC < 1:235747/150‑1 ACCCGCTGTCGTCGATCTTCGATGCCAACCATACCCGGGCCAACGGGCGGATGCTCAAGGTGCTGGCCTGGTATGACAACGAGTGGGGGTTCAGCAACCGGATGCTGGACAACTGCCTGGCGCTGCACCGGGCTGGCTGACGCGACCCGTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1150155‑1149996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCAC < NC_002947/2071272‑2071124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |