| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1297145 | NA (NA) | 6 (0.090) | 6/236 | NT | NA | coding (327/1329 nt) | PP_1133 | transposase |
| ? | NC_002947 | = 1297150 | NA (NA) | coding (332/1329 nt) | PP_1133 | transposase | |||||
GCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1296991‑1297145‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccagATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACCTT < NC_002947/1297150‑1297002 GCCTGGGGATCAAGGTCGTTGCTATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATT < 2:1234543/150‑1GCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATT < 2:1149725/150‑1GCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATT < 2:90523/150‑1GCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATT < 2:1879749/150‑1GCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCCGGATT > 2:54387/1‑150 CTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC > 2:1005923/1‑150 CTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC < 2:839065/150‑1 CTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC > 2:199444/1‑150 TGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCC > 2:638799/1‑150 TGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCC > 1:1550927/1‑150 GGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCA > 1:320449/1‑150 GGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAG < 1:392389/150‑1 GGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAG > 2:326029/1‑150 GTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGATCCACTGGCAA < 1:1895913/150‑1 CCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGTAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGATCCACTGGCAATCCA < 2:848790/150‑1 TGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC > 2:1110023/1‑128 TGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC < 1:1110023/128‑1 CTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGTAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC > 1:555930/1‑87 CTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGTAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC < 2:555930/87‑1 GCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC > 2:175325/1‑77 GCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGC < 1:175325/77‑1 GTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGATCCACTGGCAATCCAG < 1:1667934/77‑1 GTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGATCCACTGGCAATCCAG > 2:1667934/1‑77 TCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGA < 2:104198/91‑1 TCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAGTGGATCTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGA > 1:104198/1‑91 TGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCGCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACG > 2:151571/1‑150 TGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATG < 2:296741/144‑1 TGCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATG > 1:296741/1‑144 GCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGA < 2:1451023/150‑1 GCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGA > 2:1129652/1‑99 GCCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGA < 1:1129652/99‑1 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGAC > 2:912206/1‑150 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGAC > 1:929031/1‑150 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGAC > 1:1135382/1‑150 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGAC < 2:707709/150‑1 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGAC > 2:1801228/1‑150 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAA > 1:622548/1‑124 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAA < 2:622548/124‑1 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGT < 1:1763866/80‑1 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGT > 2:1763866/1‑80 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTT < 2:1758718/55‑1 CCAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTT > 1:1758718/1‑55 CAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACC < 1:1856009/150‑1 CAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACC > 1:1222944/1‑150 CAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACC < 1:1459607/150‑1 CAGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACC < 1:450259/150‑1 AGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTG < 2:1429812/95‑1 AGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTG > 1:1429812/1‑95 AGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGC < 1:1669881/93‑1 AGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGC > 2:1669881/1‑93 AGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAAC > 1:293299/1‑84 AGATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAAC < 2:293299/84‑1 GATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGATGAGATAAACGTAAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACCTT < 2:734686/150‑1 GATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACCTT < 2:1585698/150‑1 GATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACCTT < 1:972311/150‑1 GATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATC > 1:1268899/1‑115 GATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATC < 2:1268899/115‑1 GCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGCGAGCGCGGTTTTGACGTTTATCTCGTCAATGCCAGAGCAACTCGGCAAATCACGGGCCGTAAATCAGATGTGCTGGATTGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1296991‑1297145‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccagATCCACTGGCAATCCAGCACATCTGATTTACGGCCCGTGATTTGCCGAGTTGCTCTGGCATTGACGAGATAAACGTCAAAACCGCGCTCGCTGAGAATCTCGTAAATTGGAATCCAATAAACCCCCGTGGATTCCATGGCAACGACCTT < NC_002947/1297150‑1297002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |