New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 136297874 (1.010)16 (0.240) 13/230 NT 17.4% intergenic (+15/‑336) phoQ/dctA‑I sensor protein/C4‑dicarboxylate transport protein
?NC_002947 = 1363010 83 (1.230)intergenic (+47/‑304) phoQ/dctA‑I sensor protein/C4‑dicarboxylate transport protein

GGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1362824‑1362978
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCACT  <  NC_002947/1363010‑1362864
                                                                                                                                                                                                                                                                                                              
GGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCT                                                                                                                                                          >  2:1672038/1‑150
 GCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGAGCGCTGCGTTTAGGATCACCTTCCACCTGGATTGATTCTTAGCCTG                                                                                                                                                         >  2:594068/1‑150
  CTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGT                                                                                                                                                        <  1:1298796/150‑1
  CTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGT                                                                                                                                                        >  2:53255/1‑150
   TGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCCCCTTCCACCTGGATTGATTCTTAGCCTGTG                                                                                                                                                       <  1:1809107/150‑1
   TGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTG                                                                                                                                                       >  1:1361671/1‑150
   TGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTG                                                                                                                                                       >  2:820653/1‑150
     GACAGCCAGCACCCGGGGCAGGGAATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCC                                                                                                                                                     >  1:1023102/1‑150
                                   TTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGG                                                                                                                       >  1:1643340/1‑150
                                      GCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGAC                                                                                                                                  >  2:73666/1‑136
                                      GCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGAC                                                                                                                                  <  1:73666/136‑1
                                       CAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGG                                                                                                                   <  2:1643340/150‑1
                                             TCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATAGATTCTTAGCCTGTGCCAGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGG                                                                                                             <  2:309487/150‑1
                                                 GGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGG                                                                                                                   <  1:1911376/140‑1
                                                 GGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGG                                                                                                                   >  2:1911376/1‑140
                                                             CAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCTGGCCCATTCGCGGATTGACCTGCGAACGGGCTGG                                                                                                                   >  1:319912/1‑128
                                                             CAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGG                                                                                                                   <  2:319912/128‑1
                                                                                   CTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAA                                                                                                         <  2:144897/116‑1
                                                                                   CTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAA                                                                                                         >  1:144897/1‑116
                                                                                         GATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGG                                                                                                             >  2:1344895/1‑106
                                                                                         GATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGG                                                                                                             <  1:1344895/106‑1
                                                                                                             TGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGG                                                                                                                        >  2:955576/1‑75
                                                                                                             TGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGG                                                                                                                        <  1:955576/75‑1
                                                                                                                                           ATTCTTAGCCTGTGCCAGCCCGTTCGCAGGTCAATCCGCGAATGGGCCGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGAT               >  1:1672038/1‑150
                                                                                                                                                   CCTGTGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGA       <  1:256262/150‑1
                                                                                                                                                    CTGTGCCGGCCCATTCGGGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATGGCTGTCGACGATATCCTTGAC      >  2:994654/1‑150
                                                                                                                                                       TGCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCAC   <  1:799097/150‑1
                                                                                                                                                        GCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCACT  <  1:905009/150‑1
                                                                                                                                                        GCCGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGAGGCAATGCTGTCGACGATATCCTTGACCACT  <  1:1021024/150‑1
                                                                                                                                                                                                                                                                                                              
GGCTGGACAGCCAGCACCCGGGGCAGGGCATCGGCTTGGCAGTGGTCAAGGATATCGTCGACAGCTATGACGCCGAGCTGAGCCTTGGCGATTCGCCACTGGGGGGCGCTGCGTTCAGGATCACCTTCCACCTGGATTGATTCTTAGCCTGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1362824‑1362978
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgccGGCCCATTCGCGGATTGACCTGCGAACGGGCTGGCACAGGCTAAGAATCAATCCAGGTGGAAGGTGATCCTGAACGCAGCGCCCCCCAGTGGCGAATCGCCAAGGCTCAGCTCGGCGTCATAGCTGTCGACGATATCCTTGACCACT  <  NC_002947/1363010‑1362864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.