| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1363276 | 71 (0.970) | 7 (0.100) | 7/234 | NT | 9.2% | intergenic (+313/‑38) | phoQ/dctA‑I | sensor protein/C4‑dicarboxylate transport protein |
| ? | NC_002947 | = 1363280 | 72 (1.050) | intergenic (+317/‑34) | phoQ/dctA‑I | sensor protein/C4‑dicarboxylate transport protein | |||||
TTATCCCCAGCAAATACGGACCTTGCACCCTTCATGAGCATTTTGGCACCACCCTTGCTATTGATCCTCGCAGAGGCCTGCCCAGGCAGCTCGAACACAACGACAAATCCCTCCAAGTGCAGGAGGGTTAGCGATTCAGGTGCCCCATCACCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1363123‑1363276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccctTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGGGTGGTGCCAAAATGCTCATGAAGGGTGCAAGGTCCGTATTTG < NC_002947/1363280‑1363133 TTATCCCCAGCAAATACGGACCTTGCACCCTTCATGAGCATTTTGGCACCACCCTTGCTATTGATCCTCGCAGAGGCCTGCCCAGGCAGCTCGAACACAACGACAAATCCCTAAACATGAATCACTGTTATCGATTCAGGTGCCCCATCA < 1:1014329/150‑1 ATCCCCAGCAAATACGGACCTTGCACCCTTCATGAGCATTTTGGCACCACCCTTGCTATTGATCCTCGCAGAGGCCTGCCCAGGCAGCTCGAACACAACGACAAATCCCTCCAAGTGCAGGAGGGTTAGCGATTCAGGTGCCCCATCACC < 1:1411706/150‑1 CAGCAAATACGGACCTTGCACCCTTCATGAGCATTTTGGCACCACCCTTGCTATTGATCCTCGCAGAGGCCTGCCCAGGCAGCTCGAACACAACGACAAATCCCGCCAAGTGCACGAGGGTTAGCGATTCAGGTGCCTCATCACCCTTCC < 2:598212/150‑1 AATACGGACCTTGCACCCTTCATGAGCATTTTGGCACCACCCTTGCTATTGATCCTCGCAGAGGCCTGCCCAGGCAGCTCGAACACAACGACAAATCCCTCCAAGTGCAGGAGGGTTAGCGATTCAGGTGCCCCATCACCCTTCCCAGGG < 2:131239/150‑1 CAAATCCCTCCAAGTGCAGGAGGGTTAGCGATTCAGGTGCCCCATCACCCTTCCCAGGGTGATGG > 1:1803478/1‑65 CAAATCCCTCCAAGTGCAGGAGGGTTAGCGATTCAGGTGCCCCATCACCCTTCCCAGGGTGATGG < 2:1803478/65‑1 AAATCCCTCCAAGTGCAGGAGGGTTAGCGATTCAGGTGCCCCATCACCCTTCCCAGGGTGATG > 1:1178317/1‑63 AAATCCCTCCAAGTGCAGGAGGGTTAGCGATTCAGGTGCCCCATCACCCTTCCCAGGGTGATG < 2:1178317/63‑1 ATTCAGGTGCCCCATCACCCTGGGAAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGGGTGGTGCCAAAAT > 1:885577/1‑140 ATTCAGGTGCCCCATCACCCTGGGAAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGGGTGGTGCCAAAAT < 2:885577/140‑1 TCACCCTTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGGGTGGTGCCAAAATGCTCATGAAGGGTGCAAGGTCCGT < 1:48065/150‑1 CCCTTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGTGTGGTGCCAAAATGCTCATGAAGGGTGCAAGGTCCGTATT > 2:85283/1‑150 CCCTTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAG > 2:1314171/1‑85 CCCTTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAG < 1:1314171/85‑1 CCTTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGGGTGGTGCCAAAATGCTCATGAAGGGTGCAAGGTCCGTATTT > 1:181671/1‑150 CCTTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGG > 1:360685/1‑109 CCTTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGG < 2:360685/109‑1 CTTCCCAGGGTGAGGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGGGTGGTGCCAAAATGCTCATGAAGGGTGCAAGGTCCGTATTTG > 2:226750/1‑150 TTATCCCCAGCAAATACGGACCTTGCACCCTTCATGAGCATTTTGGCACCACCCTTGCTATTGATCCTCGCAGAGGCCTGCCCAGGCAGCTCGAACACAACGACAAATCCCTCCAAGTGCAGGAGGGTTAGCGATTCAGGTGCCCCATCACCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1363123‑1363276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccctTCCCAGGGTGATGGGGCACCTGAATCGCTAACCCTCCTGCACTTGGAGGGATTTGTCGTTGTGTTCGAGCTGCCTGGGCAGGCCTCTGCGAGGATCAATAGCAAGGGTGGTGCCAAAATGCTCATGAAGGGTGCAAGGTCCGTATTTG < NC_002947/1363280‑1363133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |