| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 1,385,477 | Δ42 bp | 46.3% | coding (945‑986/1266 nt) | oprD ← | basic amino acid specific porin OprD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1385476 | 19 (0.260) | 8 (0.110) | 7/242 | NT | 46.3% | coding (987/1266 nt) | oprD | basic amino acid specific porin OprD |
| ? | NC_002947 | 1385519 = | 0 (0.000) | coding (944/1266 nt) | oprD | basic amino acid specific porin OprD | |||||
CGTTGCTGGTGCCGGCGACGTTGGCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1385373‑1385476‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccACGGAGTTGGCCAGGAAGATGGTGCCGCCACCGTCGATACCATAACCATAGTCGCCGTCGCCGGTGACTTTCTGGTAGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTC > NC_002947/1385519‑1385667 CGTTGCTGGTGCCGGCGACGTTGGCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCACGGAGTTGGCCAGGAAGATGGTGCCGCCACCGTCGATACCATAAC > 1:1119716/1‑150CGTTGCTGGTGCCGGCGACGTTGGCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGAGAACCACACAGTTGGACAGGAAGATGGTGCCGCCACCGTCGATACCATAAC > 2:1506396/1‑150 TGGCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCACGGAGTTGGCCAGGAAGATGGTGCCGCCACCGTCGATACCATAACCATAGTCGCCGTCGCCGGTGA < 1:247211/150‑1 CGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCACGGAGTTGGCCAGGAAGATGGTGCCGCCACCGTCGATACCATAACCATAGTCGCCGTCGCCGGTGACTTTCT < 2:1119716/150‑1 TACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCACGGAGTTGGCCAGGAAGATGGTGCCGCCACCGTCGATACCATAACCACCGGTGACTGCGCCGGTGACTTTCTGGTAGGCCAG < 1:1506396/150‑1 CGTATTCGGCGAAGTTCAGGTCGTAGCGAGCCACGGAGTTGGCCAGGAAGATGGTGCCGCCACCGTCGATACCATAACCATAGTCGCCGTCGCCGGTGACTTTCTGGTAGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCG > 2:703124/1‑150 TCAGGTCGTAGCGAGCCACGGAGTTGGCCAGGAAGATGGTGCCGCCACCGTCGATACCATAACCATAGTCGCCGTCGCCGGTGACTTTCTGGTAGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGC < 1:703124/150‑1 CGTAGCGAGCCACGGAGTTGGCCAGGAAGATGGTGCCG‑CACCGTCGATACCATAACCATAGTCGCCGTCGCCGGTGACTTTCTGGTAGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTC > 1:1767233/1‑150 CACGGAGTTGGCCAGGAGGATGGTGCCGCCACCGTCGATACCATAACCATAGTCGCCGTCGCCGGTGACTTTCTGGTAGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTC > 2:994906/1‑150 CGTTGCTGGTGCCGGCGACGTTGGCGTCGGAACCGCGTACATAACGGGTCATGAAGGTCAGGCCTGGAATGCCGTATTCGGCGAAGTTCAGGTCGTAGCGAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1385373‑1385476‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccACGGAGTTGGCCAGGAAGATGGTGCCGCCACCGTCGATACCATAACCATAGTCGCCGTCGCCGGTGACTTTCTGGTAGGCCAGGGTGAAGGTGTGAGCGCCGATGTTGTAGGCGCCCGACAGGCTGAACGCGCGGTTGTCCAGCTTGTC > NC_002947/1385519‑1385667 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |