| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1425678 = | NA (NA) | 8 (0.110) | 5/244 | NT | 9.3% | intergenic (+73/‑432) | PP_1249/PP_1250 | DUF4223 domain‑containing protein/group II intron‑encoding maturase |
| ? | NC_002947 | 1429510 = | 79 (1.080) | intergenic (+20/‑460) | mqo‑II/PP_1252 | malate:quinone oxidoreductase/group II intron‑encoding maturase | |||||
TTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1425825‑1425678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAG > NC_002947/1429510‑1429659 TTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAA > 1:1703041/1‑150TTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAA < 2:650135/150‑1TTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAA > 1:673679/1‑150 TCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAA < 2:693782/150‑1 TCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAA < 1:561494/150‑1 TCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAA < 2:1509471/150‑1 caccgcCACCCGCGACACCCTTGCCTCCGCCTCACACTTCCCCTTTCCCCGTGTGTACAGGACTTTCACCTCCAAACCACCCACTTGGCCCCCACAACCAAGCGGTTTGCGCATACGCCCAACGCGCCATGCCTGGCGCACACAAAAAAG < 2:254523/144‑1 GCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGC < 1:308377/150‑1 GGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCA < 2:1421466/150‑1 CGGCTAACTCTTCCCCTTGCCAGGTGTGTAGACGAAATTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCACCGCCCCATGCCTGGCGAACACAAATACGCCACAGGGGAGACCTCGTGGCTTTTTT < 1:594902/150‑1 GACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCACGGGGGAGACCTCGTGGCTTTTTT > 2:769242/1‑117 GACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCACGGGGGAGACCTCGTGGCTTTTTT < 1:769242/117‑1 CACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCACGGGGGAGACCTCGTGGCTTTTTT > 2:404633/1‑88 CACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCACGGGGGAGACCTCGTGGCTTTTTT < 1:404633/88‑1 CACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCACGGGGGAGACCTCG > 2:1922579/1‑78 CACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAAAAGCCACGGGGGAGACCTCG < 1:1922579/78‑1 GCACACAAAAAAGCCACGAGGTCTCCCCCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTCTGGTGGCCAAGTGGGTGACTTGGACGGGAAAGTCCTCTACCCCCCCGGCAACGGGCAGTGT > 2:117160/1‑150 AAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAG > 1:1263701/1‑150 TTCGCGGTCACCCGCGACACCCTTGCCTCCGGCTAACACTTCCCCTTGCCGGGTGTGTAGAGGACTTTCACCTCCAAGTCACCCACTTGGCCACCACAACCAAGCGGGTTGCGCATACGCGCAACGCGCCATGCCTGGCGCACACAAAaa‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1425825‑1425678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAGCCACGGGGGAGACCTCGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAG > NC_002947/1429510‑1429659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |