| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1426821 | NA (NA) | 7 (0.100) | 4/238 | NT | NA | coding (712/1422 nt) | PP_1250 | group II intron‑encoding maturase |
| ? | NC_002947 | = 1426852 | NA (NA) | coding (743/1422 nt) | PP_1250 | group II intron‑encoding maturase | |||||
GTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1426668‑1426821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT < NC_002947/1426852‑1426705 GTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCCCGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCA < 1:649093/150‑1GTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCA > 2:312137/1‑150GTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCA > 1:928894/1‑150 GGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACG > 2:1907163/1‑150 GAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG < 1:988810/150‑1 AACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC < 2:1096864/150‑1 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCC > 1:160439/1‑150 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC > 2:258447/1‑144 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC < 1:258447/144‑1 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC > 2:1541746/1‑116 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC < 1:1541746/116‑1 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG < 2:1745524/115‑1 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG > 1:1745524/1‑115 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCG > 2:1670997/1‑150 TCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGA < 1:1670997/150‑1 TCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG < 1:1583868/92‑1 TCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG > 2:1583868/1‑92 TCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC > 1:1787681/1‑91 TCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTC < 2:1787681/91‑1 actGCGAGAGCGGGACACCTTGCGGCGTCCCCCCCTGCCGTGAGCTGACGACACCGTCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCGCTGGTGTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGT < 2:43545/147‑1 ACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGT > 2:477852/1‑150 ACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGT < 1:78149/150‑1 CGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGC < 1:317693/72‑1 CGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGC > 2:317693/1‑72 GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA < 1:1292952/150‑1 GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA < 1:1280472/150‑1 GCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGCTGCATGCCATGAGAATGTCGTGAT < 1:1500487/150‑1 GCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT > 1:1164408/1‑150 GCGAGAGCGGGCCGCCTTGCGGCATCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT < 2:1930330/150‑1 GTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1426668‑1426821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT < NC_002947/1426852‑1426705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |