| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1521035 = | 74 (1.010) | 4 (0.060) | 4/234 | NT | 5.9% | coding (250/1353 nt) | murD | UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase |
| ? | NC_002947 | 1521071 = | 58 (0.840) | coding (286/1353 nt) | murD | UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase | |||||
CTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCA‑CTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1521190‑1521035‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtggcGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGT > NC_002947/1521071‑1521217 CTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCA‑CTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTTCAAGGCCGG < 2:1748523/150‑1 GGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCA‑CTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGT < 1:1816767/150‑1 GCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCA‑CTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTG < 2:1783432/150‑1 GCGGCCATTTCACCGACCAGCGTCGTGACGGTCCTCTTGGCGTCGCACCAAGCTG‑TGGCTACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTG < 1:1887276/150‑1 GGCCATTTCACCGACCAGAGTCGTGACGGTGCTCTTGGCGTTGGAACCA‑CTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGC > 2:403127/1‑150 CAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCA‑CTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGT < 1:1012052/132‑1 CAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCA‑CTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGT > 2:1012052/1‑132 GCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCA > 1:1507992/1‑121 GCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCA < 2:1507992/121‑1 ACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTT > 1:577787/1‑90 ACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTT < 2:577787/90‑1 GGCGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCATGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGGGTGGCCGTGGGCGGT > 2:1351086/1‑150 CTTGGCGGCCATTTCACCGACCAGCGTCGTGACGGTGCTCTTGGCGTTGGAACCA‑CTGATGGCAACGATCGGCGCCTTGGCATGGCGAGCAAACAGCTCTATGTCGCCAGACAGCTTCACGCCACGCGCGGCAGCCTGCTGCAAGGCCGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1521190‑1521035‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtggcGTGAAGCTGTCTGGCGACATAGAGCTGTTTGCTCGCCATGCCAAGGCGCCGATCGTTGCCATCAGTGGTTCCAACGCCAAGAGCACCGTCACGACGCTGGTCGGTGAAATGGCCGCCAAGGCCGGCAAACGCGTGGCCGTGGGCGGT > NC_002947/1521071‑1521217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |