| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1569786 = | 57 (0.780) | 5 (0.070) | 4/228 | NT | 8.2% | coding (555/1203 nt) | pcaF‑I | beta‑ketoadipyl‑CoA thiolase |
| ? | NC_002947 | 1569821 = | 60 (0.890) | coding (590/1203 nt) | pcaF‑I | beta‑ketoadipyl‑CoA thiolase | |||||
TGAGCTTGGTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1569943‑1569786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcaggCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAGCTCAAACCGGTCAACGGCCCGGACAAGACG > NC_002947/1569821‑1569969 TGAGCTTGGTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGC < 1:878576/150‑1 GCTTGGTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGC < 1:1173285/150‑1 GCTTGGTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGC > 1:28500/1‑150 GCTTGGTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGC > 2:1792701/1‑150 TTGGTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGC > 1:771223/1‑150 TTGGTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGATGCGC > 2:865859/1‑150 GTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGG < 1:1240999/150‑1 CTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGC > 1:661839/1‑70 CTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGC < 2:661839/70‑1 CTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGC > 1:1906490/1‑64 CTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGC < 2:1906490/64‑1 TGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCA > 2:498295/1‑150 TGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAGCTCAAACCGGTCAACGGCCCGGA > 2:934740/1‑150 TGCGCAGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAGCTCAAACCGGTCAACGGCCCGGA < 2:1240999/150‑1 AGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACGTGACGAACACCTGCGCCCGGAAA > 2:1570375/1‑99 AGGCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACGTGACGAACACCTGCGCCCGGAAA < 1:1570375/99‑1 GCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAGCTCAAACCGGTCAACGGCCCGGACAAGACG < 1:1179776/150‑1 TGAGCTTGGTCAGCGCCTCCAGCGTGGTTTCCGGGCGCAGGTGTTCGTCACGTTCGACGATGATTTCGCCCTTCTTGTGAGCGATACGCACCGGCACGATTTCTTCGGCAAAGAAGCCGGCAGCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1569943‑1569786‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcgcaggCTGCCGGCTTCTTTGCCGAAGAAATCGTGCCGGTGCGTATCGCTCACAAGAAGGGCGAAATCATCGTCGAACGTGACGAACACCTGCGCCCGGAAACCACGCTGGAGGCGCTGACCAAGCTCAAACCGGTCAACGGCCCGGACAAGACG > NC_002947/1569821‑1569969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |