New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1569795	55 (0.750)	5 (0.070)	5/228	NT	8.3%	coding (564/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase
	?	NC_002947	= 1569810	60 (0.890)					coding (579/1203 nt)	pcaF‑I	beta‑ketoadipyl‑CoA thiolase

ACATGAAGCTGGAAGACACCACCATTGGCTGGCGTTTCATCAACCCGCTGATGAAGAGCCAGTACGGTGTGGATTCCATGCCGGAAACCGCCGACAACGTGGCCGACGACTATCAGGTTTCGCGTGCTGATCAGGACGCTTTCGCCCTGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1569641‑1569795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgcagcGGCAGCCTTCTGCTGGCTGCGCAGGGCGAAAGCGTCCTGATCAGCACGCGAAACCTGATAGTCGTCGGCCACGTTGTCGGCGGTTTCCGGCATGGAATCCACACCGTACTGGCTCTTCATCAGCGGGTTGATGAAACGCCAGCCAATG  <  NC_002947/1569810‑1569663                                                                                                                                                                                                                                                                                                                 ACATGAAGCTGGAAGACACCACCATTGGCTGGCGTTTCATCAACCCGCTGATGAAGAGCCAGTACGGTGTGGATTCCATGCCGGAAACCGCCGACAACGTGGCCGACGACTATCAGGTTTCGCGTGCTGATCAGGACGCTTTCGCCCTGC                                                                                                                                                           <  2:1932319/150‑1    TGAAGCTGGAAGACACCACCATTGGCTGGCGTTTCATCAACCCGCTGATGAAGAGCCAGTACGGTGTGGATTCCATGCCGGAAACCGCCGACAACGTGGCCGACGACTATCAGGTTTAGCATGCTGAAAAGTACACTATCACCCTGCGCA                                                                                                                                                        >  2:1383462/1‑150                                   TTTCATCAACCCGCTGATGAAGAGCCAGTACGGTGTGGATTCCATGCCGGAAACCGCCGACAACGTGGCCGACGACTATCAGGTTTCGCGTGCTGATCAGGACGCTTTCGCCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGC                                                                                                                                <  1:770843/143‑1                                   TTTCATCAACCCGCTGATGAAGAGCCAGTACGGTGTGGATTCCATGCCGGAAACCGCCGACAACGTGGCCGACGACTATCAGGTTTCGCGTGCTGATCAGGACGCTTTCGCCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGC                                                                                                                                >  2:770843/1‑143                                     TCATCAACCCGCTGATGAAGAGCCAGTACGGTGTGGATTCCATGCCGGAAACCGCCGACAACGTGGCCGACGACTATCAGGTTTCGCGTGCTGATCAGGACGCTTTCGCCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGGCGAAA                                                                                                                       <  1:1777072/150‑1                                                                                           CCGACAACGTGGCCGACGACTATCAGGTTTCGCGTGCTGATCAGGACGCTTTCGCCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGGCGAAAGCGTC                                                                                                                  >  1:242893/1‑101                                                                                           CCGACAACGTGGCCGACGACTATCAGGTTTCGCGTGCTGATCAGGACGCTTTCGCCCTGCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGGCGAAAGCGTC                                                                                                                  <  2:242893/101‑1                                                                                                                                                     GCGCAGCGGCAGCCTTCTGCTGGCTGCGCAGGGCGAAAGCGTCCTGATCAGCACGCGAAACCTGATAGTCGTCGGCCACGTTGTCGGCGGTTTCCGGCATGGAATCCACACCGTACTGGCTCTTCATCAGCGGGTTGATGAAACGCCAGC       <  2:532819/150‑1                                                                                                                                                          GCGGCAGCCTTCTGCTGGCTGCGCAGGGCGAAAGCGTCCTGATCAGCACGCGAAACCTGATAGTCGTCGGCCACGTTGTCGGCGGTTTCCGGCATGGAATCCACACCGTACTGGCTCTTCATCAGCGGGTTGATGAAACGCCAGCCAATG  <  2:1726126/150‑1                                                                                                                                                                                                                                                                                                                 ACATGAAGCTGGAAGACACCACCATTGGCTGGCGTTTCATCAACCCGCTGATGAAGAGCCAGTACGGTGTGGATTCCATGCCGGAAACCGCCGACAACGTGGCCGACGACTATCAGGTTTCGCGTGCTGATCAGGACGCTTTCGCCCTGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1569641‑1569795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgcagcGGCAGCCTTCTGCTGGCTGCGCAGGGCGAAAGCGTCCTGATCAGCACGCGAAACCTGATAGTCGTCGGCCACGTTGTCGGCGGTTTCCGGCATGGAATCCACACCGTACTGGCTCTTCATCAGCGGGTTGATGAAACGCCAGCCAATG  <  NC_002947/1569810‑1569663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.