| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1696155 | 98 (1.340) | 8 (0.120) | 8/232 | NT | 7.8% | coding (146/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 1696177 | 98 (1.440) | coding (168/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator | |||||
CCTGTCATGACCCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1696004‑1696155‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgcgcAGCCCCCTTGAGCGAGTGGGCAGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCCAGTGCCATCAGGCCGGCATTGAGCACTTGGGTCTGCGCCTCGGCCTCCAGGCTGAACAGTTCGAGCAACGATGCGTCG < NC_002947/1696177‑1696030 CCTGTCATGACCCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGC > 2:940876/1‑150CCTGTCATGACCCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGC > 2:84025/1‑150CCTGTCATGACCCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGC < 2:395711/150‑1 CTGTCATGACCCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACGCAAATGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGCG > 1:621004/1‑150 ATGACCCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGC > 1:162783/1‑144 ATGACCCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGC < 2:162783/144‑1 CCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGCGCAGCCCCCTT > 1:865462/1‑150 CGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGCGCAGCCCCCTTGAGCGAGTGGGCA < 2:865462/150‑1 GGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGCGCAGCCCCCTTGAGCGAGTGGG > 2:987514/1‑74 GGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGCGCAGCCCCCTTGAGCGAGTGGG < 1:987514/74‑1 AGGCCGACCAGCTCGAGGCCTGCATGCGCGCTGCCCACTCGCTCAAGGGGGCTGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCCAGTGCCATCAGGCCGGCATTGAGCACTTGGGTCTGCGCCTCGGCCTCCA > 2:1514861/1‑150 AGCTCGAGGCCTGCATGCGCGCTGCCCACTCGCTCAAGGGGGCTGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCCAGTGCCATCAGGCCGGCATTGAGCACTTGGGTCTGCGCCTCGGCCTCCAGGCTGAACA < 1:1514861/150‑1 CTCGAGGCCTGCATGCGCGCTGCCCACTCGCTCAAGGGGGCTGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCCAGTGCCATCAGGCCGGCATTGAGCACTTGGGTCTGCGCCTCGGCCTCCAGGCTGAACAGT > 1:1224389/1‑150 AGGCCTGCATGCGCGCTGCCCACTCGCTCAAGGGGGCTGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCCAGTGCCATCAGGCCGGCATTGAGCACTTGGGTCTGCGCCTCGGCCTCCAGGCTGAACAGTTCGA < 2:1224389/150‑1 CGCAGCCCCCTTGAGCGAGTGGGCAGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCCAGTGCCATCAGGCCGGCATTGAGCACTTGGGTCTGCGCCTCGGCCTCCAGGCTGAACAGTTCGAGCAACGATGCGTC < 2:1317113/150‑1 GCAGCCCCCTTGAGCGAGTGGGCAGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCCAGTGCCATCAGGCCGGCATTGAGCACTTGGGTCTGCGCCTCGGCCTCCAGGCTGAACAGTTCGAGCAACGATGCGTCG > 2:856360/1‑150 CAGCCCCCTTGAGCGAGTGGGCAGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCC < 2:1186721/71‑1 CAGCCCCCTTGAGCGAGTGGGCAGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCC > 1:1186721/1‑71 CCTGTCATGACCCCAGAGCAAATGCGCGACGCATCGTTGCTCGAACTGTTCAGCCTGGAGGCCGAGGCGCAGACCCAAGTGCTCAATGCCGGCCTGATGGCACTGGAGCGCAACCCTACCCAGGCCGACCAGCTCGAGGCCTGCATGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1696004‑1696155‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgcgcAGCCCCCTTGAGCGAGTGGGCAGCGCGCATGCAGGCCTCGAGCTGGTCGGCCTGGGTAGGGTTGCGCTCCAGTGCCATCAGGCCGGCATTGAGCACTTGGGTCTGCGCCTCGGCCTCCAGGCTGAACAGTTCGAGCAACGATGCGTCG < NC_002947/1696177‑1696030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |