New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1753571 =	66 (0.900)	5 (0.070)	5/234	NT	7.6%	coding (499/1272 nt)	PP_1555	putative Phage integrase
	?	NC_002947	1753592 =	59 (0.860)					coding (520/1272 nt)	PP_1555	putative Phage integrase

GTGGGCCAGGGTGCTTTTCATGCGCGCCATCAGGTCTTCGAGGTGCACGCCACGCAGCCTCGACGGCTTGACCGTGACCTTGGCCTTGGAGAAATCACGGAAGCGGATGCCGGCCATAGGGTTGGTGCTGATCAGGCCGAGTTTGGCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1753723‑1753571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGATTTCTCCAAGGCCAAGGTCACGGTCAAGCCGTCGAGGCTGCGTGGCGTGCACCTCGAAGACCTGATGGCGCGCATGAAAAGCACCCTGGCCCACAACCCGCAGCATGGC  >  NC_002947/1753592‑1753738                                                                                                                                                                                                                                                                                                              GTGGGCCAGGGTGCTTTTCACGCGCGCCATCAGGTCTTCGAGGTGCACGCCACGCAGCCTCGACGGCTTGACCGTGACCTTGGCCTTGGAGCGACCACGGAAGCGGATGCCGGCCATAGGGTTGGTGCTGATCAGGCCGAGTTTGGCGGC                                                                                                                                                        <  2:1719714/150‑1   GGGCCAGGGTGCTTTTCATGCGCGCCATCAGGTCTTCGAGGTGCACGCCACGCAGCCTCGACGGCTTGACCGTGACCTTGGCCTTGGAGAAATCACGGAAGCGGATGCCGGCCATAGGGTTGGTGCTGATCAGGCCGAGTTTGGCGGCCT                                                                                                                                                      >  2:1775909/1‑150   GGGCCAGGGTGCTTTTCATGCGCGCCATCAGGTCTTCGAGGTGCACACCACGCAGCCTCGACGGCTTGACCGTGACCTTGGCCTTGGAGAAATCACGGAAGCGGATGCCGGCCATAGGGTTGGTGCTGATCAGGCCGAGTTTGGCGGCCT                                                                                                                                                      >  1:1825805/1‑150                                                                                                                       GGGTTGGTGCTGATCAGGCCGAGTTTGGCGGCCTGATCAGCACCAACCCTATGGCCG                                                                                                                               <  1:295321/57‑1                                                                                                                       GGGTTGGTGCTGATCAGGCCGAGTTTGGCGGCCTGATCAGCACCAACCCTATGGCCG                                                                                                                               >  2:295321/1‑57                                                                                                                                   ATCAGGCCGAGTTTGGCGGCCTGATCAGCACCAACCCTATGGCCGGCATCCGCTTC                                                                                                                    >  1:926265/1‑56                                                                                                                                   ATCAGGCCGAGTTTGGCGGCCTGATCAGCACCAACCCTATGGCCGGCATCCGCTTC                                                                                                                    <  2:926265/56‑1                                                                                                                                        GCCGAGTTTGGCGGCCTGATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGATTTCTCCAAGGCCAAGGTCACGGTCAAGCCGTCGAGGCTGCGTGGCGTGCACCTCGAAGACCTGATGGCGCGCATGAAAAGCACCCTGGCCCAC                 >  1:643708/1‑150                                                                                                                                                     GCCTGATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGATTTCTCCAAGGCCAAGGTCACGGTCAAGCCGTCGAGGCTGCGTGGCGTGCACCTCGAAGACCTGATGGCGCGCATGAAAAGCACCCTGGCCCACAACCCGCAGCATG    >  1:480924/1‑150                                                                                                                                                      CCTGATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGATTTCTCCAAGGCCAAGGTCACGGTCAAGCCGTCGAGGCTGCGTGGCGTGCACCTCGAAGACCTGATGGCGCGCATGAAAAGCACCCTGGCCCACAACCCGCAGCATGG   <  2:1795268/150‑1                                                                                                                                                      CCTGATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGAT                                                                                                              >  1:1795952/1‑43                                                                                                                                                      CCTGATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGAT                                                                                                              <  2:1795952/43‑1                                                                                                                                                       CTGATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGATTTCTCCAAGGCCAAGGTCACGGTCAAGCCGTCGAGGCTGCGTGGCGTGCACCTCGAAGACCTGATGGCGCGCATGAAAAGCACCCTGGCCCACAACCCGCAGCATGGC  <  2:480924/150‑1                                                                                                                                                       CTGATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGATTTCTCCAAGGCCAAGGTCACGGTCAAGCCGTCGAGGCTGCGTGGCGTGCACCTCGAAGACCTGATGGCGCGCATGAAAAGCACCCTGGCCCACAACCCGCAGCATGGC  <  2:507639/150‑1                                                                                                                                                       CTGATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGATTTCTCCAAGGCCAAGGTCACGGTCAAGCCGTCGAGGCTGCGTGGCGTGCACCTCGAAGACCTGATGGCGCGCATGAAAAGCACCCTGGCCCACAACCCGCAGCATGGC  <  2:643708/150‑1                                                                                                                                                                                                                                                                                                              GTGGGCCAGGGTGCTTTTCATGCGCGCCATCAGGTCTTCGAGGTGCACGCCACGCAGCCTCGACGGCTTGACCGTGACCTTGGCCTTGGAGAAATCACGGAAGCGGATGCCGGCCATAGGGTTGGTGCTGATCAGGCCGAGTTTGGCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1753723‑1753571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgATCAGCACCAACCCTATGGCCGGCATCCGCTTCCGTGATTTCTCCAAGGCCAAGGTCACGGTCAAGCCGTCGAGGCTGCGTGGCGTGCACCTCGAAGACCTGATGGCGCGCATGAAAAGCACCCTGGCCCACAACCCGCAGCATGGC  >  NC_002947/1753592‑1753738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.