| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1906724 = | 81 (1.110) | 14 (0.240) | 9/196 | NT | 19.6% | intergenic (+22/+106) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947 | 1906818 = | 51 (0.890) | intergenic (+116/+12) | nirD/PP_1707 | nitrite reductase/D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||
GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1906898‑1906724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTC > NC_002947/1906818‑1906964 gcCGAGATGGTGGTCGCCAGCCTGGTGGATGTGCTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGGCGGCTTGGGCTGGCCTCTGCGCAGGCAAGGCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAG < 1:280152/148‑1 GCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGG > 1:556381/1‑150 TGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGG > 1:1147083/1‑150 GCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCACGCCCGCTACCACAGGGTCGGCGACGTATTACAAGGCGGAGCAGATTCGGTAGGAGCGGGCTTGGCCG > 2:496302/1‑150 GCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGATTGCCCGCGAA < 2:1637864/150‑1 GTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTT > 2:635309/1‑128 GTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTT < 1:635309/128‑1 TGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGGGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACA > 2:1922259/1‑150 AAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATA < 1:352957/98‑1 AAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATA > 2:352957/1‑98 GCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACC > 2:1356967/1‑150 GCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGAAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAGGCCGACTAGATACCCAACCCCTGCGGCGTGCGCCCCGCCCACCCATCCACCAGGATGGCAACaccc > 1:1852866/1‑146 CCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCG < 2:316056/119‑1 CCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCG > 1:316056/1‑119 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCAT > 1:1042272/1‑150 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCAC > 2:875838/1‑144 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCAC < 1:875838/144‑1 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGC < 1:652122/141‑1 CCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGC > 2:652122/1‑141 CAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCAT < 2:1042272/150‑1 AAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAG < 1:1922259/150‑1 GCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGC < 1:546647/115‑1 GCGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGC > 2:546647/1‑115 CGGGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCA < 1:86842/150‑1 GGGCTTTCCCGCGAAGAGGCCGGCACACCCCGACTAGATAGCCAACCCCAGCGGCGTGCGCCCTGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCGCATGCGCGTGCGTGTCGGTACAGTGGTACTGGCTGTTTGCGGTTGCAG < 2:1852866/150‑1 GGGCTTGCCCGCGAAGAGGCCAGCACAGGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGC < 2:989428/83‑1 GGGCTTGCCCGCGAAGAGGCCAGCACAGGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGC > 1:989428/1‑83 GGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCAC < 1:1660929/77‑1 GGCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCAC > 2:1660929/1‑77 GCTTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGA < 1:44132/150‑1 TTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACT > 1:756891/1‑150 TTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGG > 1:1060827/1‑147 TTGCCCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGG < 2:1060827/147‑1 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT > 2:1903685/1‑150 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACAT < 2:1050822/150‑1 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAG < 2:1366453/142‑1 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAG > 1:1366453/1‑142 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTC < 2:1220394/91‑1 CCGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTC > 1:1220394/1‑91 CGCGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATC < 1:1903685/150‑1 CGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCT > 2:990891/1‑108 CGAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCT < 1:990891/108‑1 GAAGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTC < 2:246067/150‑1 AGAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGC < 2:980796/150‑1 GAGGCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCG < 1:1637864/150‑1 GCCAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTC > 1:971239/1‑150 GGCGAGATGGTGGTGGCCAGCCTGGTGGATGTGTTTGCCGGGCGCACGCCGCAGGGGTTGGTTATCTAGTCGGCTTGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGGTCGGCGCCGTATTACAAGGCGGTGCAGATTCCGTAGGAGCGGGCTTGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1906898‑1906724‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagcgggcttgcccgcgaagaggccAGCACAAGCCGACTAGATAACCAACCCCTGCGGCGTGCGCCCGGCAAACACATCCACCAGGCTGGCCACCACCATCTCGCCCATGCGCGTGCGTGTCTGTACAGTGGCACTGGCGCGATGCGGTTGCAGGACTACATCTTCGCGCTC > NC_002947/1906818‑1906964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |