New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1970782	98 (1.340)	12 (0.200)	9/208	NT	13.0%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1970844	79 (1.290)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region

TCGAGGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1970616‑1970782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccggcctcttcgcgggctCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCG  <  NC_002947/1970844‑1970696                                                                                                                                                                                                                                                                                                                                TCGAGGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CAC                                                                                                                                                                         >  2:324013/1‑150   GAGGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCG                                                                                                                                                                       >  1:1123961/1‑150   GAGGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCG                                                                                                                                                                       <  2:1427686/150‑1     GGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGC                                                                                                                                                                     <  1:1152037/150‑1     GGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGC                                                                                                                                                                     <  1:205558/150‑1      GTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCGTCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCC                                                                                                                                                                    >  1:1741968/1‑150      GTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCC                                                                                                                                                                    >  2:1462789/1‑150      GTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCC                                                                                                                                                                    >  1:1677580/1‑150         TTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCT                                                                                                                                                                 <  1:1303008/150‑1         TTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCT                                                                                                                                                                 >  1:1563234/1‑150         TTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCT                                                                                                                                                                 <  1:283352/150‑1             ACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGC                                                                                                                                                             >  2:1403310/1‑150             ACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGC                                                                                                                                                             >  1:834962/1‑150              CCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCG                                                                                                                                                            >  2:643162/1‑150               CCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGG                                                                                                                                                           <  1:1469973/150‑1                CGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGCTCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGG                                                                                                                                                          <  1:1070732/150‑1                CGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGG                                                                                                                                                          >  2:467157/1‑150                         ATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGACCGCGGCATCGTCGCGCGCCCTCATGCTGCCAAGCTGGCTCAGCTGGATTGCCGCAAACGCCTGCACTGATTTTGTATGGCCT‑CACCGGCCCCTTCGCGGGCTCGCCGGC                                                                                                                                                 >  2:178795/1‑150                                                                             CGAGCGCCCTGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGG                                                                                            <  1:178795/150‑1                                                                                           CTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAA                                                                               <  1:976759/150‑1                                                                                            TGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGA                                                                             <  1:1712440/150‑1                                                                                             GCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATTGCCTGCCCCGGCATCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGA                                                                             <  1:724073/150‑1                                                                                                        TCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGC                                                                 <  1:64969/150‑1                                                                                                        TCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGG                                                                                            <  2:355524/123‑1                                                                                                        TCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGG                                                                                            >  1:355524/1‑123                                                                                                                                GCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGC                                                                                      <  2:1702366/105‑1                                                                                                                                GCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGC                                                                                      >  1:1702366/1‑105                                                                                                                                            TATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGG                                                                                            <  1:1161355/87‑1                                                                                                                                            TATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGG                                                                                            >  2:1161355/1‑87                                                                                                                                                 cccgCACCGGCGTCTTCGCGGGCTCCCCCGCCCCCACAGGTGCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGA                         <  1:399086/146‑1                                                                                                                                                     CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAG                             <  1:1763763/142‑1                                                                                                                                                     CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAG                             >  2:1763763/1‑142                                                                                                                                                       CCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGCTACACAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGC                   >  1:898794/1‑150                                                                                                                                                        CGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCT                  >  1:1829568/1‑150                                                                                                                                                         GGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTT                 >  1:324013/1‑150                                                                                                                                                             TCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGGAG‑GAGCTAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCA             <  1:337362/150‑1                                                                                                                                                             TCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCA             >  2:1899342/1‑150                                                                                                                                                             TCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCA             <  1:1046482/150‑1                                                                                                                                                               TTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGC           >  2:1741968/1‑150                                                                                                                                                               TTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGC           >  2:1050080/1‑150                                                                                                                                                               TTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGC           >  1:1158914/1‑150                                                                                                                                                                TCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCCTGCGGAATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCA          >  1:1320049/1‑150                                                                                                                                                                      GCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCCGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAG                                                    <  2:512567/102‑1                                                                                                                                                                      GCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGCTACAAAATCAG                                                    >  1:512567/1‑102                                                                                                                                                                      GCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGCGCCAGCTTGGCAGCATCCGGG    >  1:886473/1‑150                                                                                                                                                                      GCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGC                                                                          >  1:1275408/1‑80                                                                                                                                                                      GCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGC                                                                          <  2:1275408/80‑1                                                                                                                                                                        TCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCG  >  1:988253/1‑150                                                                                                                                                                                                                                                                                                                                TCGAGGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1970616‑1970782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccggcctcttcgcgggctCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGT‑GGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCG  <  NC_002947/1970844‑1970696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.