New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2095171 =	66 (0.900)	4 (0.060)	4/240	NT	5.9%	intergenic (‑179/+138)	htpX/alaA	protease HtpX/glutamate‑pyruvate aminotransferase
	?	NC_002947	2095200 =	63 (0.890)					intergenic (‑208/+109)	htpX/alaA	protease HtpX/glutamate‑pyruvate aminotransferase

GGCGCTCGATCTCACAGGCACCACACCACTTGCGGCAAACACCCAGCGGCCTTGACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2095229‑2095171 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGTCGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTCAGGAAATTGCCGATCCGGC  >  NC_002947/2095200‑2095346                                                                                                                                                                                                                GGCGCTCGATCTCACAGGCACCACACCACTTGCGGCAAACACCCAGCGGCCTTGACGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCGGACCACCCCCCCCGCGTCGAACAGCTCGTAGgcgc                                                          >  2:1216523/1‑146                              TTGCGGCAAACACCCAGCGGCCTTGACGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCA                                                                                           <  1:541056/88‑1                              TTGCGGCAAACACCCAGCGGCCTTGACGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCA                                                                                           >  2:541056/1‑88                                       ACACCCAGCGGCCTTGACGCAAGTGGTGTGGTGCCTGTGAGATCGCGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGTCGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTCA                    <  1:1216523/150‑1                                                        CGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCCCGTCGAACCTCTCGTAGCCCCCCGCGCCCCCCTCGAAACCTACTGCGAATAACCCCTCAGGAAAATTCCGATCCGG   >  2:1121963/1‑150                                                        CGCAAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCAACCCAAACCCGCGCGTCGAACGTCTCGTAGCCCCCTGCGCCCCCGTGGAACCCTACTTCGAATAACCCTTCAGGAAATTGCCGATCCGG   <  2:1190128/150‑1                                                         gaAAGTGGTGTTGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCCCGGCGAACCTCCCGTAGCCCCCCGCGCCCCCCTCGAACCCTACTTCGAATAACCCTTCCGGAAAATGCCGATCCCGC  >  2:1449398/3‑150                                                                                                                                                                                                                GGCGCTCGATCTCACAGGCACCACACCACTTGCGGCAAACACCCAGCGGCCTTGACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2095229‑2095171 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaAGTGGTGTGGTGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTGCGCCCCACCACCACCCCCGCGTCGAACCTCTCGTAGCCCCCGGCGCCCCCGTCGAACCCTACTGCGAATAACCCTTCAGGAAATTGCCGATCCGGC  >  NC_002947/2095200‑2095346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.