| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2099989 | 99 (1.360) | 15 (0.210) | 7/248 | NT | 13.3% | intergenic (‑57/‑148) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | = 2100110 | 97 (1.330) | intergenic (‑178/‑27) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
AACCGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2099844‑2099989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAG < NC_002947/2100110‑2099999 AACCGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTACTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGTGGG < 1:640588/150‑1 GCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGTGGGGGCCGCTGCG > 2:1849543/1‑150 TCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTTTT‑‑‑‑‑‑‑TGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCG > 2:348960/1‑150 CTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTTTT‑‑‑‑‑‑‑TGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG < 1:348960/150‑1 AGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG < 2:1723994/150‑1 ATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCA > 1:541393/1‑150 CGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAcccg > 1:1051064/1‑138 CGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG < 2:1051064/142‑1 AATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGC > 1:1578895/1‑150 AGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCGGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGA < 1:1849543/150‑1 GCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAG < 2:541393/150‑1 CTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGTGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAG < 2:1578895/150‑1 TGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG < 1:131323/125‑1 TGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGG > 2:131323/1‑125 TCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAAC < 1:1632925/116‑1 TCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAAC > 2:1632925/1‑116 AACCGGGCTTGCTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2099844‑2099989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGGGGCCGCTGCGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGGCTTGCGTTCAGCCTGGGGCTAAGCTGTACCTGTGGGAACGGGCAAGCCCGCGGAGGGGCGCCAAG < NC_002947/2100110‑2099999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |