New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2143416	90 (1.230)	6 (0.090)	6/232	NT	6.3%	coding (153/435 nt)	PP_1899	ExbD/TolR family protein
	?	NC_002947	= 2143445	93 (1.360)					coding (182/435 nt)	PP_1899	ExbD/TolR family protein

AAGTTCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2143267‑2143416 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccagcTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGTGAAGGTGGTGGTAACCACGAAGAACAGCAGCAGGACGAACACCACGTCGATCAGCGACGCCAGGTTGATGTCGAC  <  NC_002947/2143445‑2143297                                                                                                                                                                                                                                                                                                             AAGTTCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGC                                                                                                                                                       >  2:200944/1‑150                                                                      GTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTT                                                                                                               <  1:357524/121‑1                                                                      GTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTT                                                                                                               >  2:357524/1‑121                                                                                            TTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCTTGCCCGGGTCGGCCGGCGCCGACTCGGCGCTGGTGG                                                                                                                  <  1:526371/96‑1                                                                                            TTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGCTTGCCCGGGTCGGCCGGCGCCGACTCGGCGCTGGTGG                                                                                                                  >  2:526371/1‑96                                                                                                CACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGC‑‑G‑CCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTG                                                                                                                   <  1:666219/88‑1                                                                                                CACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGC‑‑G‑CCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTG                                                                                                                   >  2:666219/1‑88                                                                                                                                                 ACCAGCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCG                                                                                >  1:32169/1‑77                                                                                                                                                 ACCAGCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCG                                                                                <  2:32169/77‑1                                                                                                                                                     GCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGTGAAGGTGGTGGTAACCACGAAGAACAGCAGCAGGACGAACACCACGTCGATCAGCGACGCCAGGTTGATGTCGA   <  2:1749405/150‑1                                                                                                                                                     GCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGTGAAGGTGGTGGTAACCACGAAGAACAGCAGCAGGACGAACACCACGTCGATCAGCGACGCCAGGTTGATGTCGA   <  2:1532993/150‑1                                                                                                                                                     GCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGTGAAGGTGGTGGTAACCACGAAGAACAGCAGCAGGACGAACACCACGTCGATCAGCGACGCCAGGTTGATGTCGA   <  1:672475/150‑1                                                                                                                                                     GCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGT                                                                             <  2:192903/76‑1                                                                                                                                                     GCTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGT                                                                             >  1:192903/1‑76                                                                                                                                                      CTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGTGAAGGTGGTGGTAACCACGAAGAACAGCAGCAGGACGAACACCACGTCGATCAGCGACGCCAGGTTGATGTCGAC  <  2:663237/150‑1                                                                                                                                                      CTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGTGAAGGTGGTGGTAACCACGAAGAACAGCAGCAGGACGAACACCACGTCGATCA                        <  1:695507/128‑1                                                                                                                                                      CTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGTGAAGGTGGTGGTAACCACGAAGAACAGCAGCAGGACGAACACCACGTCGATCA                        >  2:695507/1‑128                                                                                                                                                                                                                                                                                                             AAGTTCCGGCGCAATCGCCAGCGGGAGAACGTCGACATCAACCTGGCGTCGCTGATCGACGTGGTGTTCGTCCTGCTGCTGTTCTTCGTGGTTACCACCACCTTCACCCGCGAAACGCAACTTCGCGTCGAGCTGCCCGAAGCCACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2143267‑2143416 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaccagcTTGCCCGGGTCGGCCGGCGCCGGCTCGGCGCTGGTGGCTTCGGGCAGCTCGACGCGAAGTTGCGTTTCGCGGGTGAAGGTGGTGGTAACCACGAAGAACAGCAGCAGGACGAACACCACGTCGATCAGCGACGCCAGGTTGATGTCGAC  <  NC_002947/2143445‑2143297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.