New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2245492 =	76 (1.040)	4 (0.070)	4/202	NT	6.5%	intergenic (+23/‑313)	dusC/ibpA	tRNA‑dihydrouridine synthase DusC/small heat shock protein IbpA
	?	NC_002947	2245596 =	53 (0.890)					intergenic (+127/‑209)	dusC/ibpA	tRNA‑dihydrouridine synthase DusC/small heat shock protein IbpA

GGGTGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2245661‑2245492 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCGGCCATATCT  >  NC_002947/2245596‑2245742                                                                                                                                                                                                                                                                                                                               GGGTGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTC                                                                                                                                                                         >  1:1425278/1‑150  GGTGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCAGCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCG                                                                                                                                                                        <  2:1864858/150‑1   GTGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGC                                                                                                                                                                       <  1:1840057/150‑1     GAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     <  2:587900/150‑1     GAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     <  2:537051/150‑1     GAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     <  1:1440501/150‑1     GAACCAGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATACTCAAGCAGTCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     <  2:750868/150‑1      AACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGG                                                                                                                                                                    >  1:1660195/1‑150         CCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAA                                                                                                                                                                 >  2:1093155/1‑150               CTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAATCCCGC                                                                                                                                                           <  2:75019/150‑1                   ACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCT                                                                                                                                                       >  1:1629517/1‑150                   ACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAAAAGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCT                                                                                                                                                       >  1:1207744/1‑150                    CGGCGGCTTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTA                                                                                                                                                      <  2:919034/150‑1                     GGCGGCCTGTGCCCAACCACCGACCTGTGTCCATACTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGCCCCTTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                     >  2:865833/1‑150                                CCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTC                                                                                                                                                         <  2:1291553/135‑1                                CCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTC                                                                                                                                                         >  1:1291553/1‑135                                                TGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     <  1:1521366/107‑1                                                TGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     >  2:1521366/1‑107                                                  TCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     <  2:289645/105‑1                                                  TCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     >  2:1265574/1‑105                                                  TCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     >  1:289645/1‑105                                                  TCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGG                                                                                                                                                                     <  1:1265574/105‑1                                                    CATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGC                                                                                                                                                           >  1:202578/1‑113                                                    CATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGC                                                                                                                                                           <  2:202578/113‑1                                                      TCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                     <  2:585733/117‑1                                                      TCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                     >  1:585733/1‑117                                                        CTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTC                                                                                                                                                         <  1:1608509/111‑1                                                        CTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTC                                                                                                                                                         >  2:1608509/1‑111                                                         TCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGC                                                                                                                                                           >  1:1791446/1‑108                                                         TCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGC                                                                                                                                                           <  2:1791446/108‑1                                                             TCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTT                                                                                                                     >  2:970360/1‑142                                                             TCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTT                                                                                                                     <  1:970360/142‑1                                                                                  CCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGC                                                                                                                 >  1:1469228/1‑125                                                                                  CCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGC                                                                                                                 <  2:1469228/125‑1                                                                                                         AACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAAC                                                                                                                                                               <  2:1778465/56‑1                                                                                                         AACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAAC                                                                                                                                                               >  1:1778465/1‑56                                                                                                                                                       GCGGGTAAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCAT                   >  2:675056/1‑150                                                                                                                                                       GCGGGTAAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCAT                   >  2:1437729/1‑150                                                                                                                                                         GGGTAAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTT                 <  2:241184/150‑1                                                                                                                                                            TAAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCC              >  1:1127065/1‑150                                                                                                                                                             AAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCT             <  2:1440501/150‑1                                                                                                                                                             AAACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCT             <  2:729653/150‑1                                                                                                                                                               ACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTGTCCCTTGAAAGCATTGCCCTCG           <  2:1888139/150‑1                                                                                                                                                               ACCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAACCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCG           <  2:221367/150‑1                                                                                                                                                                CCCTCTCCTACGCCTGATTGAGGATGGACTGAGGGCGGTGGTGGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCGG          <  2:17863/150‑1                                                                                                                                                                CCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCGG          >  2:1285614/1‑150                                                                                                                                                                CCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCGG          >  2:1815595/1‑150                                                                                                                                                                CCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCGG          >  2:930819/1‑150                                                                                                                                                                CCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATC                                                 <  2:454540/111‑1                                                                                                                                                                CCCGCTCCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATC                                                 >  1:454540/1‑111                                                                                                                                                                      CCTACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCGGCCATAT    <  1:388784/150‑1                                                                                                                                                                        TACGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCGGCCATATCT  >  1:314112/1‑150                                                                                                                                                                                                                                                                                                                               GGGTGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2245661‑2245492 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtaaacccgctcctacGCCTGATCGAGGATGGACACAGGTCGGTGGTTGGGCACAGGCCGCCGTGTAGGAACGGGTTCACCCGCGAAGAGGCCATCAAACCCCGTGCAAAAAAATCAAATTTTTTCTATTTATCCCTTGAAAGCATTTCCCTCGGCCATATCT  >  NC_002947/2245596‑2245742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.