| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2340738 = | 64 (0.880) | 6 (0.090) | 7/232 | NT | 10.5% | intergenic (+29/‑86) | dctA‑II/yraO | C4‑dicarboxylate transport protein/transporter YraO |
| ? | NC_002947 | 2340765 = | 42 (0.620) | intergenic (+56/‑59) | dctA‑II/yraO | C4‑dicarboxylate transport protein/transporter YraO | |||||
GTGACAGGCGTTTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2340893‑2340738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgggggTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCACCGATCGTCGCGCTGACCAT > NC_002947/2340765‑2340912 GTGACAGGCGTTTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGG < 2:807785/150‑1 CAGGCGTTTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGG < 1:1801137/150‑1 AGGCGTTTACTCACGATGAGGGAGGTCAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGCTGGGG < 2:410771/150‑1 TTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGG < 2:1177252/150‑1 TTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGG < 2:1177339/150‑1 TACTCATGATCAGGTAGGTGAGGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGG < 2:817564/150‑1 TACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGG > 2:693493/1‑150 ACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGG < 1:693493/150‑1 CTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGG > 1:1409823/1‑140 CTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGG < 2:1409823/140‑1 ATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCT > 2:1537781/1‑126 ATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCT < 1:1537781/126‑1 TTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCAGGCGTTGCCGGGTGGGGGTCAGG < 2:1932361/89‑1 TTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCAGGCGTTGCCGGGTGGGGGTCAGG > 1:1932361/1‑89 TTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGGG > 1:476340/1‑65 TTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGGG < 2:476340/65‑1 caCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTG > 1:1327760/3‑150 TGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCAT > 1:572024/1‑118 TGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCAT < 2:572024/118‑1 GGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCACCGATCGTCGCGCTGACCAT > 2:1395793/1‑150 GTGACAGGCGTTTACTCATGATCAGGTAGGTGAAGGTCACCACCATGATCAGGCCCAGAAGTGCGAGCATGGTTTGTTCTCTTGTTTTTATTGTCTATGTGGCCACCTGCAGCGCAGACGGCCCCCTGACCCCCACCCGGCAACGCCTGGTGGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2340893‑2340738‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgggggTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCACCGATCGTCGCGCTGACCAT > NC_002947/2340765‑2340912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |