New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2466081 =	65 (0.890)	5 (0.070)	3/238	NT	7.4%	coding (277/681 nt)	copR‑I	transcriptional regulator
	?	NC_002947	2466131 =	63 (0.900)					coding (227/681 nt)	copR‑I	transcriptional regulator

CCGGCGACCACGACCTGCTGATCCTCGACGTGATGCTGCCCGGCCGCGACGGCTGGCAGATCCTTCAGGCCGTGCGCCAGGCTGGCCTGGATACGCCAGTGCTGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2466233‑2466081 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaacAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTGGTCGCCGGTCAGGGCGAGGAACTGGCCGGTCTCGCCATCGGTGGCCAATTC  >  NC_002947/2466131‑2466276                                                                                                                                                                                                                                                                                                             CCGGCGACCACGACCTGCTGATCCTCGACGTGATGCTGCCCGGCCGCGACGGCTGGCAGATCCTTCAGGCCGTGCGCCAGGCTGGCCTGGATACGCCAGTGCTGTTCCTGACCGCCCGAGACGCCGTCGAGGATCGCGTGCATGGCCTGG                                                                                                                                                       <  2:1399657/150‑1  CGGCGACCACGACCTGCTGATCCTCGACGTGATGCTGCCCGGCCGCGACGGCTGGCAGATCCTTCAGGCCGTGCGCCAGGCTGGCCTGGATACGCCAGTGCTGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGA                                                                                                                                                      >  1:827961/1‑150  CGGCGACCACGACCTGCTGATCCTCGACGTGATGCTGCCCGGCCGCGACGGCTGGCAGATCCTTCAGGCCGTGCGCCAGGCTGGCCTGGATACGCCAGTGCTGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGA                                                                                                                                                      >  2:146205/1‑150  CGGCGACCACGACCTGCTGATCCTCGACGTGATGCTGCCCGGCCGCGACGGCTGGCAGATCCTTCAGGCCGTGCGCCAGGCTGGCCTGGATACGCCAGTGCTGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGA                                                                                                                                                      >  2:1513823/1‑150                                                                                                     GCTGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTGGT                                                   >  1:553595/1‑150                                                                                                       TGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTGGTC                                                  >  1:1300424/1‑149                                                                                                       TGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTGGTC                                                  >  1:1387279/1‑149                                                                                                       TGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTGGTC                                                  <  2:1387279/149‑1                                                                                                       TGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGCAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTGGTC                                                  <  2:1300424/149‑1                                                                                                                                                      GAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTGGTCGCCGGTCAGGGCGAGGAACTGGCCGGTCTCGCCATCGGTGGCCAATTC  >  2:844475/1‑150                                                                                                                                                      GAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTG                                                     >  1:588378/1‑99                                                                                                                                                      GAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTG                                                     <  2:588378/99‑1                                                                                                                                                      GAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGC                                                                                                    >  1:1189353/1‑52                                                                                                                                                      GAACAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGC                                                                                                    <  2:1189353/52‑1                                                                                                                                                                                                                                                                                                             CCGGCGACCACGACCTGCTGATCCTCGACGTGATGCTGCCCGGCCGCGACGGCTGGCAGATCCTTCAGGCCGTGCGCCAGGCTGGCCTGGATACGCCAGTGCTGTTCCTGACCGCCCGCGACGCCGTCGAGGATCGCGTGCATGGCCTGGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2466233‑2466081 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaacAGCACTGGCGTATCCAGGCCAGCCTGGCGCACGGCCTGAAGGATCTGCCAGCCGTCGCGGCCGGGCAGCATCACGTCGAGGATCAGCAGGTCGTGGTCGCCGGTCAGGGCGAGGAACTGGCCGGTCTCGCCATCGGTGGCCAATTC  >  NC_002947/2466131‑2466276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.