New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3217808 =	54 (0.740)	4 (0.060)	4/238	NT	6.8%	coding (555/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	3217848 =	58 (0.830)					coding (595/1407 nt)	oprJ	outer membrane protein OprJ

GGTGACTTCGAGCTCGGCACGGGACTGCTCGACCAGCCCCAGCGCCTCTTGGTGGTCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGC‑‑GCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217961‑3217808 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcGAGGATTCCCTGGCGTTGGTCGGCCAGCGGCGCGCCGCCGGCACGGCCACGGCGCTGGACCACCAAGAGGCGCTGGGGCTGGTCGAGCAGTCCCGTGCCGAGCTCGAAGTCACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGT  >  NC_002947/3217848‑3217996                                                                                                                                                                                                                                                                                                                   GGTGACTTCGAGCTCGGCACGGGACTGCTCGACCAGCCCCAGCGCCTCTTGGTGGTCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGC‑‑G                                                                                                                                                           >  2:1035714/1‑150                                 CCAGCCCCAGCGCCTCTTGGTGGTCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACTCCAGGGAATCCTCGCGGC‑‑GCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGC                                                                                                                           <  1:1416161/150‑1                                                                                           GCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGC‑‑GCCGCGAGGATTCCCTGGAGTTGGTCGGCCAGCGGCGCGCCGCCGGCACGGCCACGGCGCTGGACCACCAAGAGGCGCTGGGGCTGGTCGA                                                                 <  2:1416161/150‑1                                                                                                                 TCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGC‑‑GCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCGGCGCGCCGCCGGCACGGCCACGGCGCTGGACCACCAAGAGGCGCTGG                                                                           >  1:1393452/1‑118                                                                                                                 TCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGC‑‑GCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCGGCGCGCCGCCGGCACGGCCACGGCGCTGGACCACCAAGAGGCGCTGG                                                                           <  2:1393452/118‑1                                                                                                                                                            CGAGGATTCCCTGGCGTTGGTCGGCCAGCGGCGCGCCGCCGGCACGGCCACGGCGCTGGACCACCAAGAGGCGCTGGGGCTGGTCGAGCAGTCCCGTGCCGAGCTCGAAGTCACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGT  <  1:193244/150‑1                                                                                                                                                            CGAGGATTCCCTGGCGTTGGTCGGCCAGCGGCGCGCCGCCGGCACGGCCACGGCGCTGGACCACCAAGAGGCGCTGGGGCTGGTCGAGCAGTCCCGTGCCGAGCTCGAAGTCACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGT  <  2:605384/150‑1                                                                                                                                                            CGAGGATTCCCTGGCGTTGGTCGGCCAGCGGCCCGCCGCTGTCACGGCCACGGCGCACGACCACCAAGAGGCGCTGGGGCTGGTCGAGCAGTCCCGTGCCGAGCTCGAAGTCACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGT  <  2:459692/150‑1                                                                                                                                                                                                                                                                                                                   GGTGACTTCGAGCTCGGCACGGGACTGCTCGACCAGCCCCAGCGCCTCTTGGTGGTCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGC‑‑GCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217961‑3217808 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcGAGGATTCCCTGGCGTTGGTCGGCCAGCGGCGCGCCGCCGGCACGGCCACGGCGCTGGACCACCAAGAGGCGCTGGGGCTGGTCGAGCAGTCCCGTGCCGAGCTCGAAGTCACCGTGCGCCAACAGCGCCAGGCCTACAACGCGCTGGT  >  NC_002947/3217848‑3217996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.