| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3217876 | 62 (0.850) | 5 (0.070) | 5/236 | NT | 7.4% | coding (623/1407 nt) | oprJ | outer membrane protein OprJ |
| ? | NC_002947 | = 3217899 | 67 (0.960) | coding (646/1407 nt) | oprJ | outer membrane protein OprJ | |||||
CACCGAGGAAGTCGGGCGTGCCGCACGCATCGCCCTGATCGCCGAGGTGAGCCAGGCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3217727‑3217876‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGCGCCGCTCGGCGCCGTCCAAGGCCAGGTAGGCCTGGCTCACCTCGGCGATCAGGGCGATGC < NC_002947/3217899‑3217753 CACCGAGGAAGTCGGGCGTGCCGCACGCATCGCCCTGATCGCCGAGGTGAGCCAGGCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCG > 1:783853/1‑150CACCGAGGAAGTCGGGCGTGCCGCACGCATCGCCCTGATCGCCGAGGTGAGCCAGGCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCG > 2:428166/1‑150 ACCGAGGAAGTCGGGCGTGCCGCACGCCTCGCCCTGATCGCCGAGGTGAGCCAGGCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCTCTGGCGTTGGTCGGCCAGCcg > 2:700199/1‑148 CGAGGAAGTCGGGCGTGCCGCACGCATCGCCCTGATCGCCGAGGTGAGCCAGGCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCG < 1:1662776/147‑1 CGAGGAAGTCGGGCGTGCCGCACGCATCGCCCTGATCGCCGAGGTGAGCCAGGCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCG > 2:1662776/1‑147 ATCGCCCTGATCGCCGAGGTGAGCCAGGCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTG < 1:1395099/150‑1 GCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAG < 1:972467/138‑1 GCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAG > 2:972467/1‑138 GCCTTGGACGGCGCCGAGTGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTCGTCGGCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGG < 1:1850308/115‑1 GCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGG > 2:1850308/1‑115 GCGCCGTGGGTGGGTGGGCGGCGCGCCGCTGGCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGCGCCGCTCGGCGCCGTCCAAGGCCAGGTAGGCCTGGCTCACCTCGGCGATCAGGGCGATGC < 2:49733/150‑1 GCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGCGCCGCTCGGCGCCGTCCAAGGCCAGGTAGGCCTGGCTCACCTCGGCGATCAGGGCGATGC < 2:1842012/150‑1 GCGCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGCGCCGCTCGGCGCCGTCCAAGGCCAGGTACGCTGGGCTCACCTCGGCGATCAGGGCGATGC < 1:356230/150‑1 CACCGAGGAAGTCGGGCGTGCCGCACGCATCGCCCTGATCGCCGAGGTGAGCCAGGCCTACCTGGCCTTGGACGGCGCCGAGCGGCGCCAGGCGCTGACCCGTCAGACCCTGGCCAGCCGCGAGGATTCCCTGGCGTTGGTCGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3217727‑3217876‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgCCGTGGCCGTGCCGGCGGCGCGCCGCTGGCCGACCAACGCCAGGGAATCCTCGCGGCTGGCCAGGGTCTGACGGGTCAGCGCCTGGCGCCGCTCGGCGCCGTCCAAGGCCAGGTAGGCCTGGCTCACCTCGGCGATCAGGGCGATGC < NC_002947/3217899‑3217753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |