New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3223871 = | 73 (1.000) | 4 (0.060) | 4/238 | NT | 5.6% | coding (106/681 nt) | PP_2824 | TetR family transcriptional regulator |
? | NC_002947 | 3223902 = | 65 (0.930) | coding (75/681 nt) | PP_2824 | TetR family transcriptional regulator |
TGTGGCAAACTGCCGCTTCTATTGTTTGACCGATGAAACCGCCCCCCTATGCCTGAAGTACACCCCCGCACTGCTCCCAACGCCAAGGCCAAGGCCAATGAAAGCGAATCCGAACCGCTTGCCCGTCGTGGGCGCCCGGTTGGCGATCGCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3224024‑3223871 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGGGCGGTTTCATCGGTCAAACAATAGAAGCGGCAGTTTGCCACAGCACTGCCGACGCGCGC > NC_002947/3223902‑3224041 TGTGGCAAACTGCCGCTTCTATTGTTTGACCGATGAAACCGCCCCCCTATGCCTGAAGTACACCCCCGCACTGCTCCCAACGCCAAGGCCAAGGCCAATGAAAGCGAATCCGAACCGCTTGCCCGTCGTGGGCGCCCGGTTGGCGATCGC < 2:1654994/150‑1 GGCAAACTGCCGCTTCTATTGTTTGACCGATGAAACCGCCCCCCTATGCCTGAAGTACACCCCCGCACTGCTCCCAACGCCAAGGCCAAGGCCAATGAAAGCGAATCCGAACCGCTTGCCCGTCGTGGGCGCCCGGTTGGCGATCGCGAC > 1:874732/1‑150 GGCAAACTGCCGCTTCTATTGTTTGACCGATGAAACCGCCCCCCTATGCCTGAAGTACACCCCCGCACTGCTCCCAACGCCAAGGCCAAGGCCAATGAAAGCGAATCCGAACCGCTTGCCCGTCGTGGGCGCCCGGTTGGCGATCGCGAC < 2:1657256/150‑1 TGAAAGCGAATCCGAACCGCTTGCCCGTCGTGGGCGCCCGGTTGGCGATCGCGACGGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGG > 2:1809594/1‑117 TGAAAGCGAATCCGAACCGCTTGCCCGTCGTGGGCGCCCGGTTGGCGATCGCGACGGGCAAGCGGTTCGGATTCGCTTTCATTGGCATTGGCCTTGGCGTTGGGAGCAGTGCGGGGG < 1:1809594/117‑1 TTGCCCGTCGTGGGCGCCCGGTTGGCGATCGCGACGGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGGGCGGTTTCATCGGTCAAACAATAGAAGCGGCAG > 2:1395158/1‑150 CCGTCGTGGGCGCCCGGTTGGCGATCGCGACGGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGGGCGGTTTCATCGGTCAAACAATAGAAGCGGCAGTTTG > 1:690158/1‑150 GATCGCGACGGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGTGCGGTTTCATCGGTCAAACAATAGAAGCGGCAGTTTGCCACAGCACTGCCGACGCGCGC < 1:1395158/150‑1 GACGGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGGGCGGTTTCATCGGTCAAACAATA > 1:641206/1‑108 GACGGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGGGCGGTTTCATCGGTCAAACAATA < 2:641206/108‑1 GGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGGGCGGTTTCATCGGTCAAACAATAGAAGCGGCAG > 1:138995/1‑115 GGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGGGCGGTTTCATCGGTCAAACAATAGAAGCGGCAG < 2:138995/115‑1 TGTGGCAAACTGCCGCTTCTATTGTTTGACCGATGAAACCGCCCCCCTATGCCTGAAGTACACCCCCGCACTGCTCCCAACGCCAAGGCCAAGGCCAATGAAAGCGAATCCGAACCGCTTGCCCGTCGTGGGCGCCCGGTTGGCGATCGCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3224024‑3223871 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgGGCAAGCGGTTCGGATTCGCTTTCATTGGCCTTGGCCTTGGCGTTGGGAGCAGTGCGGGGGTGTACTTCAGGCATAGGGGGGCGGTTTCATCGGTCAAACAATAGAAGCGGCAGTTTGCCACAGCACTGCCGACGCGCGC > NC_002947/3223902‑3224041 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |