New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3295035 =	75 (1.030)	4 (0.060)	4/232	NT	5.9%	intergenic (‑27/+49)	PP_2894/PP_2895	hypothetical protein/hypothetical protein
	?	NC_002947	3295062 =	58 (0.850)					intergenic (‑54/+22)	PP_2894/PP_2895	hypothetical protein/hypothetical protein

CAACCATTGTCCGAACCGCCGAACTGGAAAGCCCGGACGAAATATCCCAGGCGGACACCTTGAAACGGCCCGCGCCTGCGAACCTGACGTCCCCGTAAGAGATTGGCATTTGACCCGACAGCCCCTCCTGCCGGTAGTGGGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3295181‑3295035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaggggcTGTCGGGTCAAATGCCAATCTCTTACGGGGACGTCAGGTTCGCAGGCGCGGGCCGTTTCAAGGTGTCCGCCTGGGATATTTCGTCCGGGCTTTCCAGTTCGGCGGTTCGGACAATGGTTGGCTTGGTTGCGGCGTCAGTGAGGAA  >  NC_002947/3295062‑3295206                                                                                                                                                                                                                                                                                                      CAACCATTGTCCGAACCGCCGAACTGGAAAGCCCGGACGAAATATCCCAGGCGGACACCTTGAAACGGCCCGCGCCTGCGAACCTGACGTCCCCGTAAGAGATTGGCATTTGACCCGACAGCCCCTCCTGCCGGTAGTGGGAGGGGCTGT                                                                                                                                                <  2:1645124/150‑1                                  CGGACGAAATATCCCAGGCGGACACCTTGAAACGGCCCGCGCCTGCGAACCTGACGTCCCCGTAAGAGATTGGCATTTGACCCGACAGCCCCTCCTGCCGGTAGTGGGAG                                                                                                                                                       <  1:2964/110‑1                                  CGGACGAAATATCCCAGGCGGACACCTTGAAACGGCCCGCGCCTGCGAACCTGACGTCCCCGTAAGAGATTGGCATTTGACCCGACAGCCCCTCCTGCCGGTAGTGGGAG                                                                                                                                                       >  2:2964/1‑110                                                                 ACGGCCCGCGCCTGCGAACCTGACGTCCCCGTAAGAGATTGGCATTTGACCCGACAGCCCCTCCTGCCGGTAGTGGGAGGGG                                                                                                                                                    >  1:44969/1‑82                                                                 ACGGCCCGCGCCTGCGAACCTGACGTCCCCGTAAGAGATTGGCATTTGACCCGACAGCCCCTCCTGCCGGTAGTGGGAGGGG                                                                                                                                                    <  2:44969/82‑1                                                                                                                    CGACAGCCCCTCCTGCCGGTAGTGGGAGGGGCTGTCGGGTCAAATGCCAATCTCTTACGGGGACGTCAGGTTCGCAGGCGCGGGCCGTTTCAAGGTGTCCGCCTGGGATATTTCGTCCGG                                                           <  1:223482/120‑1                                                                                                                    CGACAGCCCCTCCTGCCGGTAGTGGGAGGGGCTGTCGGGTCAAATGCCAATCTCTTACGGGGACGTCAGGTTCGCAGGCGCGGGCCGTTTCAAGGTGTCCGCCTGGGATATTTCGTCCGG                                                           >  2:223482/1‑120                                                                                                                             CTCCTGCCGGTAGTGGGAGGGGCTGTCGGGTCAAA                                                                                                                                       <  1:621534/35‑1                                                                                                                             CTCCTGCCGGTAGTGGGAGGGGCTGTCGGGTCAAA                                                                                                                                       >  2:621534/1‑35                                                                                                                                               GGGGCTGTCGGGTCAAATGCCAATCTCTTACGGGGACGTCAGGTTCGCAGGCGCGGGCCGTTTCAAGGTGTCCGCCTGGGATATTTCGTCCGGGCTTTCCAGTTCGGCGGTTCGGACAATGGTTGGCTTGGTTGCGGCGTCAGTGAGGAA  <  2:1145105/150‑1                                                                                                                                                                                                                                                                                                      CAACCATTGTCCGAACCGCCGAACTGGAAAGCCCGGACGAAATATCCCAGGCGGACACCTTGAAACGGCCCGCGCCTGCGAACCTGACGTCCCCGTAAGAGATTGGCATTTGACCCGACAGCCCCTCCTGCCGGTAGTGGGAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3295181‑3295035 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaggggcTGTCGGGTCAAATGCCAATCTCTTACGGGGACGTCAGGTTCGCAGGCGCGGGCCGTTTCAAGGTGTCCGCCTGGGATATTTCGTCCGGGCTTTCCAGTTCGGCGGTTCGGACAATGGTTGGCTTGGTTGCGGCGTCAGTGAGGAA  >  NC_002947/3295062‑3295206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.