New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3545193 =	77 (1.050)	4 (0.060)	4/240	NT	5.2%	coding (285/2607 nt)	PP_3130	hypothetical protein
	?	NC_002947	3545232 =	72 (1.020)					coding (246/2607 nt)	PP_3130	hypothetical protein

CGACTTCAAGGTCAATGGCCCTTACCACTACACGCTGCGGGGCAAGAACAAGGAACTGGACTTCGACCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3545265‑3545193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCGTGTAGTGGTAAGGGCCATTGACCTTGAAGTCGGTATAGAAACCGGTCCAGCTCCAGTTGGCAGCCCAGAAATCGAATTTGGCCTTCATGACCGGGCCACCGCCGTGTGTCACGTTAGGCAAGCCATTTTGCTCATCGACACTGA  >  NC_002947/3545232‑3545377                                                                                                                                                                                                                             CGACTTCAAGGTCAATGGCGCTTACCACCACACGCTGCTGGGCAAGAACAAGGAACTGGACTTCGACCTGCAGCGTGTAGTGGTAAGGGCCATTCACCTTGAAGTCGGTATAGAAGCCGGTCCAGCTCCAGTTGGCAGCGCACAAATaca                                                                       >  2:21873/1‑147    CTTCAAGGTCAATGGCCCTTACCACTACACGCTGCGGGGCAAGAACAAGGAACTGGACTTCGACCTGCAGCGTGTAGTGGTAAGGGCCATTGACCTTGAAGTCGGTATAGAAACCGGTCCAGCTCCAGTTGGCAGCCCAGAAATCGAATT                                                                    <  1:21873/150‑1                           ACTACACGCTGCGGGGCAAGAACAAGGAACTGGACTTCGACCTGCAGCGTGTAGTGGTAAGGGCCATTGACCTTGAAGTCGGTATAGAAACCGGTCCAGCTCCAGTT                                                                                        <  1:1600302/107‑1                           ACTACACGCTGCGGGGCAAGAACAAGGAACTGGACTTCGACCTGCAGCGTGTAGTGGTAAGGGCCATTGACCTTGAAGTCGGTATAGAAACCGGTCCAGCTCCAGTT                                                                                        >  2:1600302/1‑107                                                                      GCAGCGTGTAGTGGTAAGGGCCATTGACCTTGAAGTCGGTATAGAAACCGGTCCAGCTCCAGTTGGCAGCCCAGAAATCGAATTTGGCCTTCATGACCGGGCCACCGCCGTGTGTCACGTTAGGCAAGCCATTTTGCTCATCGACACTGA  >  2:1245231/1‑150                                                                                                                                                                                                                             CGACTTCAAGGTCAATGGCCCTTACCACTACACGCTGCGGGGCAAGAACAAGGAACTGGACTTCGACCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3545265‑3545193 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCGTGTAGTGGTAAGGGCCATTGACCTTGAAGTCGGTATAGAAACCGGTCCAGCTCCAGTTGGCAGCCCAGAAATCGAATTTGGCCTTCATGACCGGGCCACCGCCGTGTGTCACGTTAGGCAAGCCATTTTGCTCATCGACACTGA  >  NC_002947/3545232‑3545377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.