New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3676890 =	86 (1.180)	5 (0.070)	4/236	NT	5.9%	intergenic (‑2/‑151)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	3676946 =	77 (1.110)					intergenic (‑58/‑95)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein

CATTGGAATCCCTGGCCCTACGGCGTTCGCCGTCTTCACTATAGTTCAGCGTCGCACGGCCGGAACCGGCGGCAAAAAAGATTAAACCTTTTCCCCGCCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGTGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3677043‑3676890 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgaagGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGCTTTTCGCCATCAGTGGCGA  >  NC_002947/3676946‑3677093                                                                                                                                                                                                                                                                                                                CATTGGAATCCCTGGCCCTACGGCGTTCGCCGTCTTCACTATAGTTCAGCGTCGCACGGCCGGAACCGGCGGCAAAAAAGATTAAACCTTTTCCCCGCCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGT                                                                                                                                                          <  1:87213/150‑1    TGGAATCCCTGGCCCTACGGCGTTCGCCGTCTTCACTATAGTTCAGCGTCGCACGGCCGGAACCGGCGGCAAAAAAGATTAAACCTTTTCCCCGCCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGTGAA                                                                                                                                                       >  1:1583515/1‑150     GGAATCCCTGGCCCTACGGCGTTCGCCGTCTTCACTATAGTTCAGCGTCGCACGGCCGGAACCGGCGGCAAAAAAGATTAAACCTTTTCCCCGCCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGTGAAG                                                                                                                                                      >  1:1387664/1‑150      GAATCCCTGGCCCTACGGCGTTCGCCGTCTTCACTATAGTTCAGCGTCGCACGGCCGGAACCGGCGGCAAAAAAGATTAAACCTTTTCCCCGCCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGTGAAGa                                                                                                                                                     >  1:27595/1‑149                                                                                               CCGCCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAG                                                               <  1:421132/147‑1                                                                                               CCGCCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAG                                                               >  2:421132/1‑147                                                                                                  CCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTC                                                         >  2:263998/1‑150                                                                                                               CCGTACGCGACATTGAGGTCGCGCCACGGTT‑‑GAGG‑GTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAG                                                               <  1:1059122/128‑1                                                                                                               CCGTACGCGACATTGAGGTCGCGCCACGGTT‑‑GAGG‑GTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAG                                                               >  2:1059122/1‑128                                                                                                                                                         AGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGCTTTTCGCCATCAGTGGCGA  >  1:934789/1‑150                                                                                                                                                                                                                                                                                                                CATTGGAATCCCTGGCCCTACGGCGTTCGCCGTCTTCACTATAGTTCAGCGTCGCACGGCCGGAACCGGCGGCAAAAAAGATTAAACCTTTTCCCCGCCTTCACCCTCAACCGTACGCGACATTGAGGTCGCGCCACGGTTTAAAGGAGTGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3677043‑3676890 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgaagGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGCTTTTCGCCATCAGTGGCGA  >  NC_002947/3676946‑3677093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.