New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3904016 =	63 (0.860)	6 (0.090)	6/230	NT	9.9%	coding (771/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	3904067 =	51 (0.750)					coding (720/1593 nt)	ilvA‑I	threonine deaminase

TGGCGGCTTGATCGCCGGGATCGCCGCCTATGTGAAGTACCTGCGCCCTGACGTGAAGGTGATCGGTGTCGAGCCGGCAGATTCCAACTGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3904172‑3904016 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgacggcCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATCAAGCCGCCACCGCCCACGGGCACAAAGATCGCGTCCAACGCCCCAGGGCGCT  >  NC_002947/3904067‑3904215                                                                                                                                                                                                                                                                                                                    TGGCGGCTTGATCGCCGGGATCGCCGCCTATGTGAAGTACCTGCGCCCTGACGTGAAGGTGATCGGTGTCGAGCCGGCAGATTCCAACTGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGC                                                                                                                                                              <  1:1719003/150‑1      GCTTGATCGCCGGGATCGCCGCCTATGTGAAGTACCTGCGCCCTGACGTGAAGGTGATCGGTGTCGAGCCGGCAGATTCCAACTGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACG                                                                                                                                                         >  2:1208861/1‑150      GCTTGATCGCCGGGATCGCCGCCTATGTGAAGTACCTGCGCCCTGACGTGAAGGTGATCGGTGTCGAGCCGGCAGATTCCAACTGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACG                                                                                                                                                         <  2:820334/150‑1                        CCGCCTATGTGAAGTACCTGCGCCCTGACGTGAAGGTGATCGGTGTCGAGCCGGCAGATTCCAACTGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGC                                                                                                                                                              <  1:1397023/127‑1                        CCGCCTATGTGAAGTACCTGCGCCCTGACGTGAAGGTGATCGGTGTCGAGCCGGCAGATTCCAACTGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGC                                                                                                                                                              >  2:1397023/1‑127                                                                                         TGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTC                                                                              >  1:777657/1‑142                                                                                         TGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTC                                                                              <  2:777657/142‑1                                                                                                             CGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACGG‑CGTGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGA                                                                 <  1:249336/134‑1                                                                                                             CGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACGG‑CGTGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGA                                                                 >  2:249336/1‑134                                                                                                                  GCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGG                                                                                    <  1:1271940/111‑1                                                                                                                  GCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGG                                                                                    >  2:1271940/1‑111                                                                                                                                                        GACGGCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATCAAGCCGCCACCGCCCACGGGCACAAAGATCGCGTCCAACGCCCCAGG       <  2:1691897/150‑1                                                                                                                                                            GCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATCAAGCCGCCACCGCCCACGGGCACAAAGATCTCGTCCAACGCCCCAGGG      >  1:99638/1‑147                                                                                                                                                            GCCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATCAAGCCGCCACCGCCCACGGGCACAAAGATCGCGTCCAACGCCCCAGGG      <  2:99638/147‑1                                                                                                                                                             CCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATCAAGCCGCCACCGCCCACGGGCACAAAGATCGCGTCCAACGCCCCAGGGCGCT  >  1:983620/1‑150                                                                                                                                                                                                                                                                                                                    TGGCGGCTTGATCGCCGGGATCGCCGCCTATGTGAAGTACCTGCGCCCTGACGTGAAGGTGATCGGTGTCGAGCCGGCAGATTCCAACTGCCTGCAGGCTGCCATGGCCGTCGGCGAGCGCGTGATCCTGCCGCAGGTGGGCACCTTTGCCGACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3904172‑3904016 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgacggcCATGGCAGCCTGCAGGCAGTTGGAATCTGCCGGCTCGACACCGATCACCTTCACGTCAGGGCGCAGGTACTTCACATAGGCGGCGATCCCGGCGATCAAGCCGCCACCGCCCACGGGCACAAAGATCGCGTCCAACGCCCCAGGGCGCT  >  NC_002947/3904067‑3904215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.