New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4326925 =	59 (0.810)	4 (0.060)	4/230	NT	6.8%	intergenic (+24/‑152)	pvdA/PP_3797	L‑ornithine 5‑monooxygenase/membrane protein
	?	NC_002947	4326955 =	55 (0.810)					intergenic (+54/‑122)	pvdA/PP_3797	L‑ornithine 5‑monooxygenase/membrane protein

CATCAGACGGTCTTCTGCTATTGGTGGTCGAGCGTGTGCCAACCAAAGAGTGCTGTACTGATAAGGACGAATGAGAATTGAAAACCTGCAGGTTAAAATGAAACTAAATGTTTCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4327079‑4326925 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtccggtTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCACCAATAGCAGAAGACCGTCTGATGGCCAAATCACCGAAAAAATCCAAA  >  NC_002947/4326955‑4327103                                                                                                                                                                                                                                                                                                                  CATCAGACGGTCTTCTGCTATTGGTGGTCGAGCGTGTGCCAACCAAAGAGTGCTGTACTGATAAGGACGAATGAGAATTGAAAACCTGCAGGTTAAAATGAAACTAAATGTTTCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGT                                                                                                                                                            >  2:802896/1‑150   TCAGACGGTCTTCTGCTATTGGTGGTCGAGCGTGTGCCAACCAAAGAGTGCTGTACTGATAAGGACGAATGAGAATTGAAAACCTGCAGGTTAAAATGAAACTAAATGTTTCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGTCC                                                                                                                                                          >  1:537289/1‑150      GACGGTCTTCTGCTATTGGTGGTCGAGCGTGTGCCCACCAAAGAGTGCTGTACTGATAAGGACGAATGAGAATTGAAAACCTGCAGGTTAAAATGAAACTAAATGTTTCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGTCCGGT                                                                                                                                                       >  1:1048327/1‑150       actGTCTTCTGCTATTTGCAGTCGAGCGTGTGCCAACCAAAGAGTGCTGTACTGATAAGTACGAATGAAAATTGAAAACCTGCAGGTTAAAATGAAACTAAATGTTTCAAAGCACAAAAACCGGACTGCGCACCAGGCATCAGTCCGGTc                                                                                                                                                      <  2:1291973/147‑2                                           CCAAAGAGTGCTGTACTGATAAGGACGAATGAGAATTGAAAACCTGCAGGTTAAAATGAAACTAAATGTTTCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGTC                                                                                                                                                           <  1:669424/109‑1                                           CCAAAGAGTGCTGTACTGATAAGGACGAATGAGAATTGAAAACCTGCAGGTTAAAATGAAACTAAATGTTTCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGTC                                                                                                                                                           >  2:669424/1‑109                                                                                                                 TCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGTCCGGTTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCAC                                                 <  1:1090853/145‑1                                                                                                                 TCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGTCCGGTTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCAC                                                 >  2:1090853/1‑145                                                                                                                        ACAAAAACCGGACTGCGCACGAGGCATCAGTCCGGTTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTG                                                                     >  1:1888274/1‑118                                                                                                                        ACAAAAACCGGACTGCGCACGAGGCATCAGTCCGGTTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTG                                                                     <  2:1888274/118‑1                                                                                                                                                     GTCCGGTTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCACCAATAGCAGAAGACCGTCTGATGGCCAAATCACCGAAAAAA        >  1:679469/1‑150                                                                                                                                                      TCCGGTTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCCGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCACCAATAGCAGAAGACCGTCTGATGGCCAAATCACCGAAAAAAT       >  1:618104/1‑150                                                                                                                                                        CGGTTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCACCAATAGCA                                         >  1:988333/1‑114                                                                                                                                                        CGGTTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCACCAATAGCA                                         <  2:988333/114‑1                                                                                                                                                           TTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCACCAATAGCAGAAGACCGTCTGATGGCCAAATCACCGAAAAAATCCAAA  <  1:104612/150‑1                                                                                                                                                                                                                                                                                                                  CATCAGACGGTCTTCTGCTATTGGTGGTCGAGCGTGTGCCAACCAAAGAGTGCTGTACTGATAAGGACGAATGAGAATTGAAAACCTGCAGGTTAAAATGAAACTAAATGTTTCAAAGCACAAAAACCGGACTGCGCACGAGGCATCAGTCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4327079‑4326925 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtccggtTTTTGTGCTTTGAAACATTTAGTTTCATTTTAACCTGCAGGTTTTCAATTCTCATTCGTCCTTATCAGTACAGCACTCTTTGGTTGGCACACGCTCGACCACCAATAGCAGAAGACCGTCTGATGGCCAAATCACCGAAAAAATCCAAA  >  NC_002947/4326955‑4327103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.