| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4347932 = | NA (NA) | 15 (0.210) | 8/238 | NT | NA | coding (748/1422 nt) | PP_3820 | group II intron‑encoding maturase |
| ? | NC_002947 | 4392352 = | NA (NA) | coding (707/1422 nt) | PP_3868 | group II intron‑encoding maturase | |||||
AATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4348085‑4347932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCAGATCGATTTCCA > NC_002947/4392352‑4392499 AATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCG > 2:641605/1‑150 ATCACGACATCCTCATGGCCTGCATCGAACGGCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAACCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGC > 1:212953/1‑150 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCC < 2:889600/150‑1 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCC > 1:1174642/1‑150 TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCC > 2:1881217/1‑150 ACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGT < 1:1635159/150‑1 ATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGT‑TGCTGTCGAATATCCTGCTCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGC > 2:730039/1‑150 GTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTTGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACG > 1:1734572/1‑117 GTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTTGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACG < 2:1734572/117‑1 CCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGT > 1:1329237/1‑150 CCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGC > 1:1170864/1‑139 CCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGC < 2:1170864/139‑1 CCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTCTCGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCT > 2:1533105/1‑100 CCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTCTCGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCT < 1:1533105/100‑1 CCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTCTCGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTC > 2:160439/1‑150 ACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAA > 2:1659987/1‑78 ACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAA < 1:1659987/78‑1 AGGAGGGGACGCCGCAAGGCGGCCC‑CTCCTGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGA > 2:1393742/1‑150 GGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGT‑TGCTGTCGAATATCCTGCTCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTT < 1:730039/150‑1 AGGGGACGCCGCAAGGCGGCCC‑CTCCTGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGA < 2:1026085/90‑1 AGGGGACGCCGCAAGGCGGCCC‑CTCCTGCCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGA > 1:1026085/1‑90 CCGTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCAGATCGATTTC < 2:1123258/150‑1 GTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCAGATCGATTTCCt < 2:1329237/150‑2 GTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCAGATC > 2:181139/1‑142 GTGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCAGATC < 1:181139/142‑1 AATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAGGGGACGCCGCAAGGCGGCCCGCTTTCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4348085‑4347932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtGGGCTGACG‑ACA‑CC‑GCCCGACATGATCCCGGCTTCAAGGTAGCGGCGAATAAGCCTGAGTACGCACTTATCTTTGACCCGGCGCTCGATACAGGCCATCAGGATGTCGTGGTTGACTCGATCGAAGAACTTCTCCAGATCGATTTCCA > NC_002947/4392352‑4392499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |