New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4443120	64 (0.880)	7 (0.100)	6/238	NT	10.1%	coding (906/1314 nt)	nicT	metabolite transport protein NicT
	?	NC_002947	= 4443151	63 (0.900)					coding (875/1314 nt)	nicT	metabolite transport protein NicT

GGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4442999‑4443120 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGCCAG  <  NC_002947/4443151‑4443003                                                                                                                                                                                                                                                                                 GGTTCTGGTTGAACAAGGTGCTGATGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAG‑‑CGCGGCCATTCCAAGCCTGGCCGCGC                                                                                                                         <  2:278379/150‑1              CAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCAT                                                                                                               <  1:944268/149‑1              CAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCAT                                                                                                               >  2:944268/1‑149                             CATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATATCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGG                                                                                                   <  1:1750224/146‑1                             CATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATATCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGG                                                                                                   >  2:1750224/1‑146                                                 TAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGG                                                                                                   <  1:28555/126‑1                                                 TAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGG                                                                                                   >  2:28555/1‑126                                                                                                                       GGCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCCTGGTCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGC     <  1:1877094/150‑1                                                                                                                        GCCTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGCC    >  2:1711871/1‑150                                                                                                                          CTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCGCCCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGCCAG  <  1:336403/150‑1                                                                                                                          CTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCGCAGGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGCCAG  >  2:1037026/1‑150                                                                                                                                                                                                                                                                                 GGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGCGGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4442999‑4443120 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTGCTCACGGCCATTCCAAGCCTGGCCGCGCTGGCCGGCATGCTCATGATCGGGGCCAGCTCCGACCGCCACCGCGAGCGCCGCTGGCACATCATCGTGCCGTTTATCATTGGTGCAATCGCCATGGCCAGCAGCACCTTGTTCAGCCAG  <  NC_002947/4443151‑4443003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.