New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 455201725 (0.340)4 (0.070) 4/182 NT 13.1% intergenic (+67/+114) pydA/rutR NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family
?NC_002947 = 4552068 35 (0.660)intergenic (+118/+63) pydA/rutR NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family

GCCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4551838‑4552017
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgtgtcgcgatcgggccgcGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACGCG  <  NC_002947/4552068‑4551922
                                                                                                                                                                                                                                                                                                                                       
GCCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGT                                                                                                                                                                                   <  1:68870/150‑1
 CCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGT                                                                                                                                                                                   <  2:1874302/149‑1
 CCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGT                                                                                                                                                                                   >  1:1874302/1‑149
    GATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGA                                                                                                                                                                               <  2:903394/150‑1
    GATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGA                                                                                                                                                                               <  1:1371219/150‑1
     ATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTG                                                                                                                                                                                  >  1:888614/1‑146
     ATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTG                                                                                                                                                                                  <  2:888614/146‑1
      TCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGC                                                                                                                                                                             <  2:142431/150‑1
          CTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCC                                                                                                                                                                         >  1:1287577/1‑150
                        ACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCG                                                                                                                                                           <  2:69130/150‑1
                              TCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC                                                                                                                                                     >  1:143328/1‑150
                              TCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC                                                                                                                                                     <  1:1907740/150‑1
                              TCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC                                                                                                                                                     >  1:341157/1‑150
                                                      GCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAG                                                                                                                                                                              >  1:584630/1‑101
                                                      GCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAG                                                                                                                                                                              <  2:584630/101‑1
                                                                                     GCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGT                                                                                                  <  2:1436759/146‑1
                                                                                     GCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGT                                                                                                  >  1:1436759/1‑146
                                                                                                          CAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAA                                                                              >  1:212583/1‑145
                                                                                                          CAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAA                                                                              <  2:212583/145‑1
                                                                                                                                                              CCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGG                                                             <  2:115063/110‑1
                                                                                                                                                              CCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGG                                                             >  1:115063/1‑110
                                                                                                                                                                         GATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCG                                                                                               >  2:199994/1‑65
                                                                                                                                                                         GATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCG                                                                                               <  1:199994/65‑1
                                                                                                                                                                          ATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGT              >  2:626764/1‑145
                                                                                                                                                                          ATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGT              <  1:626764/145‑1
                                                                                                                                                                             GGGCCGCGAAGCGGCCCCTCGATTTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTA      >  2:597230/1‑150
                                                                                                                                                                               GCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACG    >  1:635649/1‑150
                                                                                                                                                                                 CGCGAAGCGGCCCCTCGATGTCTGTACCCCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTGCGCTGTTCAGGCGGTGACCCGATTCAACTCGCACCACGCTAGGGGGTACGCG  >  2:116934/1‑150
                                                                                                                                                                                                                                                                                                                                       
GCCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4551838‑4552017
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgtgtcgcgatcgggccgcGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACGCG  <  NC_002947/4552068‑4551922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.