| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4591518 = | 80 (1.100) | 6 (0.090) | 5/232 | NT | 8.2% | coding (543/816 nt) | liuC | methylglutaconyl‑CoA hydratase |
| ? | NC_002947 | 4591543 = | 60 (0.880) | coding (568/816 nt) | liuC | methylglutaconyl‑CoA hydratase | |||||
CAGTAACGGCGCAGGGCCGGGCTGAGTTCGCCGTCGTCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4591673‑4591518‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCAAGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGCGAACTCAGCCCGGCCCTGCGCCGTTACTGCGAAAACACCATCGCCCG > NC_002947/4591543‑4591691 CAGTAACGGCGCAGGGCCGGGCTGAGTTCGCCGTCGTCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCG < 2:252764/150‑1CAGTAACGGCGCAGGGCCGGGCTGAGTTCGCCGTCGTCCACTTCGCGCAGAGGGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCG > 1:1505059/1‑150 GTAACGGCGCAGGGCCGGGCTGAGTTCGCCGTCGTCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCGGC < 2:1850198/150‑1 GTAACGGCGCAGGGCCGGGCTGAGTTCGCCGTCGTCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCGGC < 2:1850178/150‑1 GTAACGGCGCAGGGCCGGGCTGAGTTCGCCATCGTCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCGGC < 1:1095214/150‑1 AGGGCCGGGCTGAGTTCGCCGTCGTCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTTGCTGGCCGAGGTGTACC‑CGGCCAGCGAACTG < 2:749809/150‑1 TCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCGGCCA < 2:307900/118‑1 TCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCGGCCA > 1:307900/1‑118 GCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCGAGGTGTACC‑CGGCCAGCGAACTG > 1:1592454/1‑97 GCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCGAGGTGTACC‑CGGCCAGCGAACTG < 2:1592454/97‑1 GCTGGCCG‑GGTACACCTCGGCCAGCGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCAAGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGCGAACTCAGCCCGGCCCTGCGCCG > 2:260138/1‑150 GCCG‑GGTACACCTCGGCCAGCGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGC < 1:779787/64‑1 GCCG‑GGTACACCTCGGCCAGCGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGC > 2:779787/1‑64 CGGCCAGCGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCAAGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGGGAACTCAGCCCGGCCCTGCGCCGTTACTGCGAAAACACCA < 1:1850178/150‑1 CGGCCAGCGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCAAGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGCGAACTCAGCCCGGCCCTGCGCCGTTACTGCGAAAACACCA < 1:1850198/150‑1 CAGCGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCACGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGCGAACTCAGCCCGGCCCTGCGCCGTTACTGCGAAAACACCATCGC < 2:1374053/150‑1 CAGCGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCAAGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGCGAACTCAGCCCGGCCCTGCGCCGTTACTGCGAAAACACCATCGC > 1:22056/1‑150 GCGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCAAGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGCGAACTCAGCCCGGCCCTGCGCCGTTACTGCGAAAACACCATCGCCC < 1:343711/150‑1 CGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCAAGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGCGAACTCAGCCCGGCCCTGCGCCGTTACTGCGAAAACACCATCGCCCG > 1:125407/1‑150 CAGTAACGGCGCAGGGCCGGGCTGAGTTCGCCGTCGTCCACTTCGCGCAGCAAGTCCTTGGTGGCGCGCAATGCTTGCGGGCTGTTCTGCAGCAGGTTGCTTACCCAGGCTTCGACGTGGTCGTCCAGTTCGCTGGCCG‑GGTACACCTCGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4591673‑4591518‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcGAACTGGACGACCACGTCGAAGCCTGGGTAAGCAACCTGCTGCAGAACAGCCCGCAAGCATTGCGCGCCACCAAGGACTTGCTGCGCGAAGTGGACGACGGCGAACTCAGCCCGGCCCTGCGCCGTTACTGCGAAAACACCATCGCCCG > NC_002947/4591543‑4591691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |