New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4647603 =	13 (0.180)	7 (0.140)	6/170	NT	31.2%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4647711 =	22 (0.440)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter

CGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4647784‑4647603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGACAA  >  NC_002947/4647711‑4647857                                                                                                                                                                                                                                                                                                                                           CGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTAATAAAGGGGGGCGCACCATGTTTGTGCCTGCGGCCATCCTGTAG                                                                                                                                                                                     <  1:1013961/150‑1        CATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTTATGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGG                                                                                                                                                                              <  1:1789254/150‑1         ATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGT                                                                                                                                                                             <  1:557708/150‑1          TTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTT                                                                                                                                                                            >  2:797435/1‑150            TGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTA                                                                                                                                                                          <  1:390391/150‑1                GGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGG                                                                                                                                                                               >  2:1912811/1‑141                GGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGG                                                                                                                                                                               <  1:1912811/141‑1                  AGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCG                                                                                                                                                                    <  1:1933659/150‑1                       TGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATC                                                                                                                                                                                           >  2:901813/1‑122                       TGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATC                                                                                                                                                                                           <  1:901813/122‑1                           AGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTACGAGCGGGTTTACCCGCGAAGAGGCCG                                                                                                                                                           <  1:1717370/150‑1                            GAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGG                                                                                                                                                                              >  2:586279/1‑130                            GAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGG                                                                                                                                                                              <  1:586279/130‑1                                 TGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAa                                                                                                                                                     >  2:24085/1‑149                                   TTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGG                                                                                                                                                                              >  2:1495490/1‑123                                   TTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGG                                                                                                                                                                              <  1:1495490/123‑1                                   TTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGG                                                                                                                                                                               <  2:639773/122‑1                                   TTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGG                                                                                                                                                                               >  1:639773/1‑122                                              GGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGG                                                                                                                                                                              >  2:1210016/1‑112                                              GGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGG                                                                                                                                                                              <  1:1210016/112‑1                                                                                   GCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAG                                                                                                                                                                                     >  1:1580452/1‑68                                                                                   GCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAG                                                                                                                                                                                     <  2:1580452/68‑1                                                                                        TTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACA                                                                                                                                                      >  1:54903/1‑94                                                                                        TTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACA                                                                                                                                                      <  2:54903/94‑1                                                                                                    CCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATG                                                                                  >  2:1174490/1‑150                                                                                                         TCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCA                                                                             >  1:182075/1‑150                                                                                                           CTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACG                                                                           >  1:1515322/1‑150                                                                                                           CTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACG                                                                           >  2:1539155/1‑150                                                                                                            TACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGC                                                                          <  1:1539155/150‑1                                                                                                               AGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCA                                                                       >  1:1155792/1‑150                                                                                                                                     CCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATA                                                 <  2:1155792/150‑1                                                                                                                                                CCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCA                                      <  1:1174490/150‑1                                                                                                                                                 CTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATA                                                 <  2:677274/138‑1                                                                                                                                                 CTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATA                                                 >  1:677274/1‑138                                                                                                                                                    TAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTT                                                                >  2:60191/1‑120                                                                                                                                                    TAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTT                                                                <  1:60191/120‑1                                                                                                                                                        AGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTC                              >  1:735709/1‑150                                                                                                                                                        AGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCA                                                                             <  1:1431613/103‑1                                                                                                                                                        AGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCA                                                                             >  2:1431613/1‑103                                                                                                                                                            GGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCT                                                                                            >  2:304388/1‑84                                                                                                                                                            GGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCT                                                                                            <  1:304388/84‑1                                                                                                                                                             GTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGC                         >  2:1804134/1‑150                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAAC                   >  1:303635/1‑150                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAAC                   >  2:842659/1‑150                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTT                                                                >  2:347665/1‑105                                                                                                                                                                   CCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTT                                                                <  1:347665/105‑1                                                                                                                                                                     GCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGG                 >  2:1900206/1‑150                                                                                                                                                                              CCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAAT        <  2:390391/150‑1                                                                                                                                                                              CCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAAT        <  2:1717370/150‑1                                                                                                                                                                               CGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATC       >  1:836306/1‑150                                                                                                                                                                                 GCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGA     <  2:1269924/150‑1                                                                                                                                                                                    CAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGACAA  >  1:665046/1‑150                                                                                                                                                                                    CAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAA            <  1:81755/140‑1                                                                                                                                                                                    CAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAA            >  2:81755/1‑140                                                                                                                                                                                                                                                                                                                                           CGTGGTGCATTTGTCGGAGCGGTGCAAGAAGCTGTTGAAGCGGGCGGGCGAGCAGCATTGAAAACTGTTGCGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGGCGCACAATGTTTGGGCCTGCGGCCATCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4647784‑4647603 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGACAA  >  NC_002947/4647711‑4647857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.