| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4683545 = | 71 (0.970) | 4 (0.060) | 4/234 | NT | 5.9% | coding (138/1830 nt) | PP_4146 | peptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4683577 = | 60 (0.870) | coding (170/1830 nt) | PP_4146 | peptide ABC transporter substrate‑binding protein | |||||
GACCATCAGTGGCTCGTTCAGCTCGCTGATGCCGTACTGCTGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4683695‑4683545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgggCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCAGCAGTACGGCATCAGCGAGCTGAACGAGCCACTGATGGTCGGCACGGGCCAGTACGACCCGTCCGGTG > NC_002947/4683577‑4683723 GACCATCAGTGGCTCGTTCAGCTCGCTGATGCCGTACTGCTGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGG < 1:1109953/150‑1GACCATCAGTGGCTCGGTCAGCGCGCTGATGCCGTACTGCTGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGG < 1:587050/150‑1 GTTCAGCTCGCTGATGCCGTACTGCTGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGGG > 1:1580372/1‑136 GTTCAGCTCGCTGATGCCGTACTGCTGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGGG < 2:1580372/136‑1 CTGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGG > 1:1378165/1‑111 CTGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGG < 2:1378165/111‑1 TGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGG < 1:1216974/110‑1 TGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGG > 2:1216974/1‑110 ACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCG < 1:72569/81‑1 ACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCG > 2:72569/1‑81 AAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGC < 1:734717/112‑1 AAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGC > 2:734717/1‑112 CCGCAACGTGCCGCCCTTGGGCGCTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCA < 1:167926/110‑1 CCGCAACGTGCCGCCCTTGGGCGCTTGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCA > 2:167926/1‑110 TGCGGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCAGCAGTACGGCATCAGCGAGCTGAACGAGCCACTGATGGTCGGCACGGGCCAGTACGACCCGTCCG < 2:1109953/150‑1 GGGCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCAGCAGTACGGCATCAGCGAGCTGAACGAGCCACTGATGGTCGGCACGGGCCAGTACGACCCGTCCGGTG < 2:738462/150‑1 GACCATCAGTGGCTCGTTCAGCTCGCTGATGCCGTACTGCTGGAAATTGGGCGTGGTAATCGGGCTCGACCCTTTGAAGGTGTAGGGGTTGAGCGTGTCGAAGGTACCAAAAGCCATGGCCCGCAACGTGCCGCCCTTGGGCGCTTGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4683695‑4683545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgggCCATGGCTTTTGGTACCTTCGACACGCTCAACCCCTACACCTTCAAAGGGTCGAGCCCGATTACCACGCCCAATTTCCAGCAGTACGGCATCAGCGAGCTGAACGAGCCACTGATGGTCGGCACGGGCCAGTACGACCCGTCCGGTG > NC_002947/4683577‑4683723 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |