New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4889640	57 (0.780)	5 (0.090)	5/194	NT	8.8%	intergenic (+41/‑112)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4889677	59 (1.040)					intergenic (+78/‑75)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase

GAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4889468‑4889640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggctcgcccgcgaaGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCGCGC  <  NC_002947/4889677‑4889529                                                                                                                                                                                                                                                                                                                                    GAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCT                                                                                                                                                                              >  2:1715829/1‑150   GATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGT                                                                                                                                                                            <  2:1009300/150‑1    ATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTG                                                                                                                                                                           <  1:676986/150‑1     TCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGG                                                                                                                                                                          <  2:136486/150‑1     TCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGG                                                                                                                                                                          <  1:1728980/150‑1       AACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGA                                                                                                                                                                        >  1:1257514/1‑150           ACCGCTTCCTGTTCGAACACCTGGCCCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGG                                                                                                                                                                    <  1:894880/150‑1            CCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCTGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGG                                                                                                                                                                   >  1:1397965/1‑150               CTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCATAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTC                                                                                                                                                                >  2:674563/1‑150               CTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTC                                                                                                                                                                >  2:348417/1‑150               CTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTC                                                                                                                                                                >  1:1395486/1‑150               CTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCCCACCACCCCCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTC                                                                                                                                                                <  1:1554010/150‑1                TTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCG                                                                                                                                                               <  1:679789/150‑1                   CTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCC                                                                                                                                                            <  2:1541735/150‑1                      TTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCG                                                                                                                                                         <  2:1553303/150‑1                          AACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCC                                                                                                                                                                               <  1:1437394/124‑1                          AACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCC                                                                                                                                                                               >  2:1437394/1‑124                                      GCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCGCGCCCGCGAAGCAGACAACTCGGT                                                                                                                                         <  1:568387/150‑1                                         TTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTG                                                                                                                                                                           >  1:253738/1‑113                                         TTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTG                                                                                                                                                                           <  2:253738/113‑1                                                CCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGAC                                                                                                                                                                                 <  1:1505066/100‑1                                                CCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGAC                                                                                                                                                                                 >  2:1505066/1‑100                                                                                                                    CCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC                                                                                                         >  1:654511/1‑104                                                                                                                    CCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC                                                                                                         <  2:654511/104‑1                                                                                                                         AACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGA                                                                                                       <  1:715049/101‑1                                                                                                                         AACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGA                                                                                                       >  2:715049/1‑101                                                                                                                                                   CCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGT                            <  2:1062104/150‑1                                                                                                                                                    CCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTG                           <  2:1104889/150‑1                                                                                                                                                    CCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTG                           >  1:1319194/1‑150                                                                                                                                                    CCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTG                           <  1:1033459/150‑1                                                                                                                                                    CCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGGGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTGTCAGCCAGCCCAGGCCCGCTTCCGTG                           >  2:227840/1‑150                                                                                                                                                       GTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTG                        >  2:298312/1‑150                                                                                                                                                       GTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTG                        <  1:289369/150‑1                                                                                                                                                       GTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGCTGGTa                        <  2:812304/150‑2                                                                                                                                                        TGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTG                                                                                                                                        <  2:420932/37‑1                                                                                                                                                        TGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTG                                                                                                                                        >  1:420932/1‑37                                                                                                                                                           GAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGCTTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCA                    <  2:1243106/150‑1                                                                                                                                                             GCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTG                                                                                                                        >  2:802535/1‑48                                                                                                                                                             GCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTG                                                                                                                        <  1:802535/48‑1                                                                                                                                                                   TCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGCGATGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCCGTGGCGGTCAGCGGCTTG            >  1:661477/1‑150                                                                                                                                                                     GCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAG                                                                                         <  2:921172/71‑1                                                                                                                                                                     GCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAG                                                                                         >  1:921172/1‑71                                                                                                                                                                      CCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTTGGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTAC         >  2:706844/1‑150                                                                                                                                                                      CCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTAC         >  1:1419624/1‑150                                                                                                                                                                        CGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGT                                                                                                                 <  2:1555753/44‑1                                                                                                                                                                        CGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGT                                                                                                                 >  1:1555753/1‑44                                                                                                                                                                           GAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCGC    <  2:1319194/150‑1                                                                                                                                                                             AGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCGCGC  <  2:1011819/150‑1                                                                                                                                                                                                                                                                                                                                    GAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4889468‑4889640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggctcgcccgcgaaGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCGCGC  <  NC_002947/4889677‑4889529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.