New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5095534	76 (1.040)	5 (0.070)	5/238	NT	6.4%	coding (406/690 nt)	hisQ	histidine/lysine/arginine/ornithine ABC transporter permease
	?	NC_002947	= 5095549	73 (1.040)					coding (391/690 nt)	hisQ	histidine/lysine/arginine/ornithine ABC transporter permease

GTCAGCCGCCTGCTTGGCCTTGAACATCATGTCCTGCAGACCGACGACCGAAATCAGCGCAGTAGCCTTGGTCAGCACCAGCCAGTTGTTGGTGAAGCCCGGAATGGCCAGGCGAATCATTTGCGGCACCTGGATACGGAAGAACACCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5095382‑5095534 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgTATGGCATGAGCCCTCGCCAGGTGTTCTTCCGTATCCAGGTGCCGCAAATGATTCGCCTGGCCATTCCGGGCTTCACCAACAACTGGCTGGTGCTGACCAAGGCTACTGCGCTGATTTCGGTCGTCGGTCTGCAGGACATGATGTTC  <  NC_002947/5095549‑5095403                                                                                                                                                                                                                                                                                                              GTCAGCCGCCTGCTTGGCCTTGAACATCATGTCCTGCAGACCGACGACCGAAATCAGCGCAGTAGCCTTGGTCAGCACCAGCCAGTTGTTGGTGAAGCCCGGAATGGCCAGGCGAATCATTTGCGGCACCTGGATACGGAAGAACACCTG                                                                                                                                                        >  1:111557/1‑150  TCAGCCGCCTGCTTGGCCTTGAACATCCTGTCCTGCAGACCGAGGACCGAAATCAGCGCAGTAGCCTTGGTCAGCACCAGCCAGTTGTTGGTGAAGCCCGGAATGGCCAGGCGAATCATTTGCGGCACCTGGATACGGAAGAACACCTGG                                                                                                                                                       >  2:223931/1‑150                               GTCCTGCAGACCGACGACCGAAATCAGCGCAGTAGCCTTGGTCAGCACCAGCCAGTTGTTGGTGAAGCCCGGAATGGCCAGGCGAATCATTTGCGGCACCTGGATACGGAAGAACACCTGGCGTATGGCATGAGCCCTCGCCAGGTGTTC                                                                                                                          <  1:620324/150‑1                                                         GCGCAGTAGCCTTGGTCAGCACCAGCCAGTTGTTGGTGAAGCCCGGAATGGCCAGGCGAATCATTTGCGGCACCTGGATACGGAAGAACACCTGGCGTATGGCATGAGCCCTCGCCAGGTGTTCTTC                                                                                                                       <  1:1202759/127‑1                                                         GCGCAGTAGCCTTGGTCAGCACCAGCCAGTTGTTGGTGAAGCCCGGAATGGCCAGGCGAATCATTTGCGGCACCTGGATACGGAAGAACACCTGGCGTATGGCATGAGCCCTCGCCAGGTGTTCTTC                                                                                                                       >  2:1202759/1‑127                                                                                                                       ATTTGCGGCACCTGGATACGGAAGAACACCTGGCGTATGGCATGAGCCCTCGCCAG                                                                                                                                <  1:1118002/56‑1                                                                                                                       ATTTGCGGCACCTGGATACGGAAGAACACCTGGCGTATGGCATGAGCCCTCGCCAG                                                                                                                                >  2:1118002/1‑56                                                                                                                                                       GCGTATGGCATGAGCCCTCGCCAGGTGTTCTTCCGTATCCAGGTGCCGCAAATGATTCGCCTGGCCATTCCGGGCTTCACCAACAACTGGCTGGTGCTGACCAAGGCTACTGCGCTGATTTCGGTCGTCGGTCTGCAGGACATGATGTTC  >  1:124874/1‑150                                                                                                                                                                                                                                                                                                              GTCAGCCGCCTGCTTGGCCTTGAACATCATGTCCTGCAGACCGACGACCGAAATCAGCGCAGTAGCCTTGGTCAGCACCAGCCAGTTGTTGGTGAAGCCCGGAATGGCCAGGCGAATCATTTGCGGCACCTGGATACGGAAGAACACCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5095382‑5095534 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgTATGGCATGAGCCCTCGCCAGGTGTTCTTCCGTATCCAGGTGCCGCAAATGATTCGCCTGGCCATTCCGGGCTTCACCAACAACTGGCTGGTGCTGACCAAGGCTACTGCGCTGATTTCGGTCGTCGGTCTGCAGGACATGATGTTC  <  NC_002947/5095549‑5095403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.