New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5111564 =	82 (1.120)	4 (0.060)	4/234	NT	5.1%	coding (896/1068 nt)	rluB	23S rRNA pseudouridylate synthase B
	?	NC_002947	5111604 =	71 (1.030)					coding (856/1068 nt)	rluB	23S rRNA pseudouridylate synthase B

GGGCGAAATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5111719‑5111564 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccaGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTCGCCCTGGGTCATTTC  >  NC_002947/5111604‑5111730                                                                                                                                                                                                                                                                                             GGGCGAAATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCC                                                                                                                                       >  1:1545264/1‑150   GCGAAATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGG                                                                                                                                     >  2:1503755/1‑150      AAATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCC                                                                                                                                  >  2:1485774/1‑150       AATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCA                                                                                                                                 <  1:16091/150‑1                                                                                                                      GGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCAGCGGGCGGGTCGACTTGCGCTGC                                                                                                          >  1:846820/1‑62                                                                                                                      GGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCAGCGGGCGGGTCGACTTGCGCTGC                                                                                                          <  2:846820/62‑1                                                                                                                        GCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCAGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTCG                >  1:1360719/1‑150                                                                                                                                      GTGCGCAACCTGCGCCCGGCCCAGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTCGCCCTGGGTCATTTC  >  2:895674/1‑150                                                                                                                                                                                                                                                                                             GGGCGAAATCGACATCCTCGCCGCCGAAGTGGGCCTGCAGCCGGTCGCGCTGCCAGCCATGAAGCTCAAGGCCAAGGACAAGATGGAGCGCCTGCAGCGCAAGTCGACCCGCCCGCTGGGCCGTGGCGAGCGCGTGCGCAACCTGCGCCCGGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5111719‑5111564 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcccaGCGGGCGGGTCGACTTGCGCTGCAGGCGCTCCATCTTGTCCTTGGCCTTGAGCTTCATGGCTGGCAGCGCGACCGGCTGCAGGCCCACTTCGGCGGCGAGGATGTCGATTTCGCCCTGGGTCATTTC  >  NC_002947/5111604‑5111730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.