New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5125125 = | 98 (1.340) | 8 (0.120) | 7/230 | NT | 7.0% | intergenic (+51/‑131) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
? | NC_002947 | 5125224 = | 122 (1.800) | intergenic (+150/‑32) | PP_4511/PP_4512 | AraC family transcriptional regulator/DMT superfamily permease |
TGCGCCGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5125282‑5125125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggcaCTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTTC > NC_002947/5125224‑5125366 TGCGCCGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGG < 2:362342/150‑1 CGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCG > 2:776902/1‑150 CGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCG < 1:1528163/150‑1 AGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGC > 2:589044/1‑150 TGGTGGGTCCTTGATGGAGATCTCTACAGGCGGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGG > 2:1193959/1‑124 TGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGG < 1:1193959/124‑1 CTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGG > 2:805334/1‑116 CTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGG < 1:805334/116‑1 ATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGG > 2:923853/1‑105 ATCTCTACAGGCAGTGCCGGCCCTTGCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGG < 1:923853/105‑1 CTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCACCCTGTAGGATCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCAC > 2:352628/1‑150 AGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCATGTAGGAGCGGGATTACCAGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCA > 1:1833829/1‑150 GTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCA < 1:465163/146‑1 GTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCA > 2:465163/1‑146 GCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCT > 2:1315348/1‑150 AGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCG > 1:106971/1‑150 CGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATC < 1:352628/150‑1 CGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATC < 2:1833829/150‑1 GGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCT > 1:260653/1‑150 GGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTT < 2:1845891/150‑1 GCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTTC < 2:260653/150‑1 GCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTTC > 1:1473331/1‑150 GCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTTC > 1:1175154/1‑150 GGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTC < 2:1309015/105‑1 GGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTC > 1:1309015/1‑105 TGCGCCGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5125282‑5125125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggcaCTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTTC > NC_002947/5125224‑5125366 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |