New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5133646	54 (0.740)	3 (0.040)	3/240	NT	5.2%	coding (680/1359 nt)	tolC	agglutination protein
	?	NC_002947	= 5133696	58 (0.820)					coding (730/1359 nt)	tolC	agglutination protein

GCAGCACCGCCGACCTCGACCAGTCCCGCGCCCGTCGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTGGAAAGCCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5133502‑5133646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaTGCCATCGCGGGCTTCTTCGAGGGTGCCTGGCACCTCGCCCTTGATGCTCTGCGGGCTTTCCAGCTCGTCCGGGGCACGGCCAATCACACTGAAGAAGTTGGCCTCGGCATCGGCCAGGTCGACTTCGGCGGTGTCCAGGTTGTTT  <  NC_002947/5133696‑5133551                                                                                                                                                                                                                                                                                                     GCAGCACCGCCGACCTCGACCAGTCCCGCGCCCGTCGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTGGAAAGCCCGCATGCCA                                                                                                                                               >  1:856495/1‑150                                                       ACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTGGAAAGCCCGCATGCCATCGCGGGCTTCTTCGAGGGTGCCTGGCACCTCGCCCTTGATGCTCTGCGGGCTT                                                                                         <  2:856495/150‑1                                                                                                                      GTGCCCCGGACGAGCTGGAAAGCCCGCATGCCATCGCGGGCTTCTTCGAGGGTGCCTGGCACCTCGCCCTTGATGCTCTGCGGGCTTTC                                                                                       <  1:1428079/89‑1                                                                                                                      GTGCCCCGGACGAGCTGGAAAGCCCGCATGCCATCGCGGGCTTCTTCGAGGGTGCCTGGCACCTCGCCCTTGATGCTCTGCGGGCTTTC                                                                                       >  2:1428079/1‑89                                                                                                                                              CGCATGCCATCGCGGGCTTCTTCGAGGGTGCCTGGCACCTCGCCCTTGATGCTCTGCGGGCTTTCCAGCTCGTCCGGGGCACGGCCAATCACACTGAAGAAGTTGGCCTCGGCATCGGCCAGGTCGACTTCGGCGGTGTCCAGGTTGTTT  <  1:1747069/150‑1                                                                                                                                                                                                                                                                                                     GCAGCACCGCCGACCTCGACCAGTCCCGCGCCCGTCGCGCCCTGGCGGAAAACAACCTGGACACCGCCGAAGTCGACCTGGCCGATGCCGAGGCCAACTTCTTCAGTGTGATTGGCCGTGCCCCGGACGAGCTGGAAAGCCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5133502‑5133646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaTGCCATCGCGGGCTTCTTCGAGGGTGCCTGGCACCTCGCCCTTGATGCTCTGCGGGCTTTCCAGCTCGTCCGGGGCACGGCCAATCACACTGAAGAAGTTGGCCTCGGCATCGGCCAGGTCGACTTCGGCGGTGTCCAGGTTGTTT  <  NC_002947/5133696‑5133551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.